pailloufat-stack

Pinned Repositories

dada2
Accurate sample inference from amplicon data with single nucleotide resolution
Language:R469 39 2k142
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Language:C++540 29 65987
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Language:R584 54 1.6k187
pb-metagenomics-tools
Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
Language:HTML175 13 6336
trgt
Tandem repeat genotyping and visualization from PacBio HiFi data
Language:Rust103 30 438
AGAT
Another Gff Analysis Toolkit
Language:Perl00
bioinfscripts
Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.
Language:Perl0 0 00
SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
Language:HTML00
GUSrelate
Genotyping Uncertainty with Sequencing data and RELATEdness
Language:R1 2 20

pailloufat-stack's Repositories

pailloufat-stack/AGAT
Another Gff Analysis Toolkit
Language:Perl00
pailloufat-stack/bioinfscripts
Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.
Language:Perl0 0 00
pailloufat-stack/SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
Language:HTML00