Issues
- 1
error laoding the dada2 library
#1965 opened by marwa38 - 14
DADA2 Error Rate Plots
#1963 opened by goodguynickpt - 5
Increasing number of nonchimeric reads compared to the number of input reads
#1947 opened by Abdelrahim-maker - 0
40% of reads survived the pipeline
#1917 opened by dsamoht - 0
- 0
Add tracking and checking or guidance on what chimera removal method to use based on dada pooling mode
#1964 opened by benjjneb - 8
Drop in Qualityscore in the middle of the reads
#1935 opened by MadsBjornsen - 5
- 3
Cluster ASVs to OTUs with DECIPHER
#1950 opened by Danyang1111 - 2
- 3
Trimming/ derep error
#1953 opened by tobaiasbama - 2
`plotErrors` improvements: Drop zero-observation points and scale points by number of observations
#1961 opened by benjjneb - 8
nonchim percentage
#1921 opened by murheisa - 1
too long in removing chimeras
#1916 opened by Karelynz - 3
Half of the bar chart has no data
#1918 opened by CatCatcher1 - 0
Construct phylogenetic tree error
#1919 opened by MiriamFuentesV - 0
- 1
Need helping solving error during inserting a loop of parameters inside the filterandtrim command
#1923 opened by akspat - 1
computational requirements for running DADA2
#1926 opened by madjus98 - 5
Loosing reads after merging
#1928 opened by hellewiedunkle - 2
Problem trimming primers
#1929 opened by Gian77 - 3
- 4
Non-fitting Error Plots
#1937 opened by SophMN - 4
Taxonomy assignment
#1938 opened by SRC151 - 4
Number of ASVs changes on different computers/R versions?
#1939 opened by vmsur - 5
BiocParallel error
#1940 opened by ThibauldMichel - 5
error: no input files found from Assign taxonomy
#1941 opened by bylee613 - 2
- 1
dada2 reference database for eukaryotes
#1943 opened by eunicetan - 7
- 3
- 2
- 4
High chimera rate: +80%
#1957 opened by Mx-nene - 1
- 1
Switch from a phyloseq object to a dada2 object
#1922 opened by pailloufat-stack - 6
reference database for the function AssignTaxonomy()
#1925 opened by madjus98 - 2
- 1
garbled fastq files after Filter and trim
#1930 opened by Danyang1111 - 6
Segmentation fault core dumped on the derep step with Kinnex full length reads
#1959 opened by sbedwell27 - 4
- 1
- 4
Unexpected results after cutadapt
#1955 opened by jesika0123 - 5
- 4
Is denoising required for kraken analysis?
#1952 opened by BrinthaVP - 1
derep
#1954 opened by tobaiasbama - 0
Solving the "Error: BiocParallel errors", in almost every sample analysis
#1945 opened by Yoonseopark02 - 2
Don't know if singletons are being removed or not
#1934 opened by migfejo - 1
- 1
AIUTO file parsing
#1931 opened by chiaragiovannetti11111 - 2