Pinned Repositories
2018_ASM_Workshop
Microbiome Analysis Using R Workshop hosted at the 2018 ASM General Meeting in Atlanta, GA.
CanineEpilepsyManuscript
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
decontam
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
DecontamManuscript
Reprocible analyses accompanying the paper introducing the decontam method
ITS-Workflow
A descriptory pipeline for processing ITS Samples using DADA2
LoopManuscript
LRASManuscript
Reproducible Analyses accompanying DADA2 + PacBio Manuscript
NCSUWorkshop
Workshop materials for NCSU workshop on DADA2 and Phyloseq
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
benjjneb's Repositories
benjjneb/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
benjjneb/decontam
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
benjjneb/LRASManuscript
Reproducible Analyses accompanying DADA2 + PacBio Manuscript
benjjneb/LoopManuscript
benjjneb/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
benjjneb/DecontamManuscript
Reprocible analyses accompanying the paper introducing the decontam method
benjjneb/ITS-Workflow
A descriptory pipeline for processing ITS Samples using DADA2
benjjneb/NCSUWorkshop
Workshop materials for NCSU workshop on DADA2 and Phyloseq
benjjneb/2018_ASM_Workshop
Microbiome Analysis Using R Workshop hosted at the 2018 ASM General Meeting in Atlanta, GA.
benjjneb/CanineEpilepsyManuscript
benjjneb/bioconda-recipes
Conda recipes for the bioconda channel.
benjjneb/FelineBileManuscript
benjjneb/GookinGroup
Updating Rmarkdown for the exploration of T.foetus data for the GookinGroup
benjjneb/q2-dada2
QIIME 2 plugin wrapping DADA2