Pinned Repositories
ALL_Infection_and_the_Microbiome
Repo for R scripts used to analysis ALL data
Cambodia_Iron_Supplement
This repository contains all of the code for the in preperation manuscript:
Comparison_of_DA_microbiome_methods
corncob
Count Regression for Correlated Observations with the Beta-binomial
DenoiseCompare
Comparison Project
Denoiser-Comparison
Repository for scripts used for the Denosier Comparison Project
differential-abundance-analysis
differential-abundance-theory
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
Nearing_et_al_2020_Oral_Microbiome
Contains all of the code used to analysis results presented in Nearing et al. 2020 "Assessing the variation within the oral microbiome of healthy adults"
q2-vsearch
vsearch plugin for QIIME 2
nearinj's Repositories
nearinj/Comparison_of_DA_microbiome_methods
nearinj/Denoiser-Comparison
Repository for scripts used for the Denosier Comparison Project
nearinj/Nearing_et_al_2020_Oral_Microbiome
Contains all of the code used to analysis results presented in Nearing et al. 2020 "Assessing the variation within the oral microbiome of healthy adults"
nearinj/ALL_Infection_and_the_Microbiome
Repo for R scripts used to analysis ALL data
nearinj/microbiome_helper
An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.
nearinj/q2-vsearch
vsearch plugin for QIIME 2
nearinj/Cambodia_Iron_Supplement
This repository contains all of the code for the in preperation manuscript:
nearinj/corncob
Count Regression for Correlated Observations with the Beta-binomial
nearinj/DenoiseCompare
Comparison Project
nearinj/differential-abundance-analysis
nearinj/differential-abundance-theory
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
nearinj/Maaslin2
MaAsLin2: Microbiome Multivariate Association with Linear Models
nearinj/nearinj.github.io
Repository that holds my personal website written in rmarkdown
nearinj/Oral_Microbiome_Prostate_Breast_Colon_Cancer
nearinj/RandomForestUtils
RandomForestUtils R Package
nearinj/Template_webpage