Pinned Repositories
BURST
An ultrafast optimal aligner for mapping large NGS data to large genome databases.
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
microbiome-stats
Code for microbiome pipeline
MicrobiomeGPS
MicrobiomeReports
A library of R functions for reporting microbiome data
MicrobiomeStat
M stat pipeline
POC-GEN
Repo for working on dockerfiles for ONT software
SHOGUN
SHallow shOtGUN profiler
stromboli
stromboli
SJohnsonMayo's Repositories
SJohnsonMayo/BURST
An ultrafast optimal aligner for mapping large NGS data to large genome databases.
SJohnsonMayo/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
SJohnsonMayo/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
SJohnsonMayo/microbiome-stats
Code for microbiome pipeline
SJohnsonMayo/MicrobiomeGPS
SJohnsonMayo/MicrobiomeReports
A library of R functions for reporting microbiome data
SJohnsonMayo/MicrobiomeStat
M stat pipeline
SJohnsonMayo/POC-GEN
Repo for working on dockerfiles for ONT software
SJohnsonMayo/SHOGUN
SHallow shOtGUN profiler
SJohnsonMayo/stromboli
stromboli
SJohnsonMayo/UNCALLED
Raw nanopore signal mapper that enables real-time targeted sequencing