taxonomy
There are 533 repositories under taxonomy topic.
electric-capital/crypto-ecosystems
A taxonomy for open source cryptocurrency, blockchain, and decentralized ecosystems
soedinglab/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Ecogenomics/GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
benjjneb/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
bugcrowd/vulnerability-rating-taxonomy
Bugcrowd’s baseline priority ratings for common security vulnerabilities
rinvex/laravel-categories
Rinvex Categorizable is a polymorphic Laravel package, for category management. You can categorize any eloquent model with ease, and utilize the power of Nested Sets, and the awesomeness of Sluggable, and Translatable models out of the box.
shenwei356/taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
bioinformatics-centre/kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
MISP/misp-taxonomies
Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.
ropensci/taxize
A taxonomic toolbelt for R
widdowquinn/pyani
Application and Python module for average nucleotide identity analyses of microbes.
WetHat/OnenoteTaggingKit
OneNote (desktop) add-in to manage OneNote pages by page tags
Imageomics/bioclip
This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].
Nhogs/popoto-examples
Contains a list of Popoto.js examples
wponion/wponion
~ Lightweight, Flexible & Rapid WP Development Framework ~
zyxue/ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
sequana/sequana
Sequana: a set of Snakemake NGS pipelines
steineggerlab/Metabuli
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
grunwaldlab/metacoder
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
ropensci/rfishbase
R interface to the fishbase.org database
AbertayMachineLearningGroup/network-threats-taxonomy
Machine Learning based Intrusion Detection Systems are difficult to evaluate due to a shortage of datasets representing accurately network traffic and their associated threats. In this project we attempt at solving this problem by presenting two taxonomies
pirovc/ganon
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
SpeciesFileGroup/taxonworks
Workbench for biodiversity informatics.
Lecturize/Laravel-Taxonomies
Simple, nestable Terms & Taxonomies (aka Categories) for Laravel.
wp-cli/entity-command
Manage WordPress comments, menus, options, posts, sites, terms, and users.
shenwei356/bio
A lightweight and high-performance bioinformatics package in Golang
sonata-project/SonataClassificationBundle
Symfony SonataClassificationBundle
IABTechLab/fideslang
Open-source description language for privacy to declare data types and data behaviors in your tech stack in order to simplify data privacy globally. Supports GDPR, CCPA, LGPD and ISO 19944.
moshi4/ANIclustermap
A tool for drawing ANI clustermap between all-vs-all microbial genomes
wikibonsai/wikibonsai
A jungle gym for thought with an API for the mind.
pr2database/pr2database
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
mickeysjm/TaxoExpan
The source code used for self-supervised taxonomy expansion method TaxoExpan, published in WWW 2020
sparna-git/skos-play
SKOS-Play allows to print SKOS files in HTML or PDF. It also embeds xls2rdf to generate RDF from Excel.
ArctosDB/arctos
Arctos is a museum collections management system
morningmoni/TaxoRL
Code for paper "End-to-End Reinforcement Learning for Automatic Taxonomy Induction", ACL 2018
oracuk/oisru
Repository for the Open Information Security Risk Universe