bioinformatics-centre/kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
CGPL-3.0
Issues
- 2
Getting Repeated Species in cell free DNA profiles
#287 opened by arpit20328 - 0
No fmi file after kaiju-makedb
#286 opened by Tpowell7 - 0
Alpha diversity
#285 opened by RarltyOne - 1
"Behind the Paper" Link Seems to be Broken
#284 opened by GilChrist19 - 3
Segmentation fault (core dumped)
#277 opened by DoreenAA2023 - 4
Is there a way to reduce memory requirement?
#258 opened by aelbehery - 0
kaiju2table taxonomic ranks for viruses
#283 opened by jbergt - 2
- 0
Not able to download any kaiju_database from https://bioinformatics-centre.github.io/kaiju/downloads.html
#282 opened by arpit20328 - 9
makedb progenomes fails
#273 opened by Mewgia - 1
refseq_nr makedb issue
#280 opened by asulit08 - 1
Fungal reads - Which is the best database?
#278 opened by andressamv - 2
Segmentation fault error in kaiju-mkbwt
#276 opened by LilyAnderssonLee - 7
- 1
kaiju-makedb mar and mar_db
#270 opened by spencerlong1 - 0
make new release v1.10
#275 opened by pmenzel - 2
- 2
more than 73% is unclassified.
#271 opened by jojyjohn28 - 3
Kaiju run command gets killed
#269 opened by pratibha-kadam - 4
- 3
Question on kaiju classification from PacBio data
#246 opened by DaRinker - 0
- 1
Issue with extracting taxdump
#266 opened by Mayurk619 - 4
Unable to Find Taxon_ID of the Top-hit Species in Kaiju Output File Despite Being the Highest-Reads Species in Kaiju2table Output
#265 opened by SenyuanGu - 1
Error cannot open file
#263 opened by akhwela - 0
converting kaiju output to biom format
#264 opened by najoshi - 0
webserver is down
#262 opened by rec3141 - 8
Sementation fault using March 2022 databases
#242 opened by skgs1970 - 3
Processing of non-canonical amino acids
#251 opened by alvanuffelen - 1
- 4
kaiju-makedb -s viruses _ Missing file
#261 opened by Viola-TA - 0
eukdetect gets stuck on taxonomize
#260 opened by umerijaz - 4
Identifying unclassified?
#238 opened by shaylashahar - 2
Reads classification algorithm
#259 opened by adieg - 0
update kaiju-makedb to use progenomes v3
#248 opened by pmenzel - 3
creating custom db causes classification issues
#257 opened by najoshi - 4
unable to custom DB
#255 opened by juejun14 - 4
- 4
Different result from blast hit
#253 opened by MonicaSteffi - 1
kaiju-makedb -s nr_euk fails
#252 opened by ko519 - 4
Extracting AA sequences from each sample
#245 opened by andressamv - 4
Why is the percent unclassified (including "cannot be assigned to <taxa-level>") lower for species than for genus?
#249 opened by LLansing - 8
Problem with kaiju-multi mode
#247 opened by ElsaMMendes - 1
- 2
- 1
`-a greedy`: `-a` must be a valid mode.
#241 opened by ebete - 1
- 7
Problem running kaiju-makedb on a cluster
#239 opened by LeonardosMageiros - 1
Non-coding sequence question
#237 opened by namnh7 - 0
kaiju-makedb: Mar DB fails
#236 opened by pmenzel