Pinned Repositories
nanofilt
Filtering and trimming of long read sequencing data
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
datasets
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
plotly.py
The interactive graphing library for Python :sparkles: This project now includes Plotly Express!
seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
LactoMiner
Tool to mine Lactobacillus sequences from the SRA and classify them on the subgenus level
nanofilt
Filtering and trimming of long read sequencing data
NanoPlot
Plotting scripts for long read sequencing data
alvanuffelen's Repositories
alvanuffelen/nanofilt
Filtering and trimming of long read sequencing data
alvanuffelen/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.