ncbi/datasets

Issues

• Querying by gene_id in /genome/accession/{accession}/annotation_report

  #398 opened 2 days ago by manulera
  0

• Genes without locus tag in GCF_030052815.1

  #397 opened 2 days ago by manulera
  0

• Gray background on openAPI docs if system dark mode is on (MacOS)

  #376 opened 10 days ago by manulera
  3

• No genes annotated at the species level for taxon 2975324

  #396 opened 10 days ago by farchaab
  1

• datasets not working with for loop

  #395 opened 10 days ago by pedres
  2

• Version/date specifier to download old instead of latest genome annotations

  #393 opened 17 days ago by gatoniel
  1

• How we can enable datasets from firewall

  #392 opened a month ago by chen1i6c04
  1

• Missing assembly

  #391 opened a month ago by muffato
  3

• "/note" feature retrieving through command lines

  #389 opened a month ago by GabrielFalque
  2

• Additional space in column name when asking for the field "Assembly BioSample Strain"

  #388 opened a month ago by greenmna
  1

• Possible to query datasets by genome notes?

  #386 opened 2 months ago by michaelbarton
  2

• Rabies genome package includes invalid host taxon ids

  #385 opened 2 months ago by joverlee521
  1

• annotation_info missing for GCF_000002945.1 in genome/accession/{accession}/dataset_report

  #380 opened 2 months ago by manulera
  7

• Extra info in 404 response if assembly exist but not included in the datasets API

  #370 opened 3 months ago by manulera
  6

• IFU blood collection needle

  #384 opened 2 months ago by somayeh82
  4

• npm OpenAPI build script fails to run

  #378 opened 2 months ago by pipparichter
  1

• How to download genome annotation report

  #379 opened 3 months ago by gunjanpandey
  1

• Download error for list of WP accessions

  #372 opened 3 months ago by ericcox1
  11

• datasets RefSeq download does not retrieve all data

  #382 opened 2 months ago by tallnuttrbgv
  1

• Include more metadata from genbank files in virus reports, e.g. `/note` and `/strain`

  #338 opened 5 months ago by corneliusroemer
  5

• `--preview` option returns 'panic: send on closed channel'

  #374 opened 2 months ago by dtdoering
  3

• Add an `--include all` option to `datasets download genome`

  #375 opened 3 months ago by dtdoering
  2

• Regression: False error "3048448 appears to be an invalid tax name" for all taxons I've tried

  #373 opened 3 months ago by corneliusroemer
  2

• Getting error "Error: Internal error (invalid zip archive). Please try again." Take 2

  #360 opened 3 months ago by corneliusroemer
  23

• Add publication info to assembly or BioProject fields.

  #369 opened 3 months ago by conchoecia
  2

• Partial sequence download

  #368 opened 3 months ago by mkdevesh
  1

• Flag obsolete records in dataset

  #365 opened 3 months ago by joverlee521
  2

• Minor typo for "documentaion" in unzipped datasets output

  #364 opened 3 months ago by d33bs
  4

• Use ISO date formatting for date input

  #366 opened 3 months ago by ammaraziz
  3

• Getting incorrect error: "186538 appears to be an invalid tax name"

  #367 opened 3 months ago by corneliusroemer
  1

• datasets summary crashes when called on a soon to be renamed genus Candida/Metschnikowiaceae

  #358 opened 4 months ago by Jtrachsel
  2

• `--debug` dumps a lot of binary to stderr

  #362 opened 4 months ago by corneliusroemer
  1

• Getting error Error: Internal error (invalid zip archive). Please try again

  #356 opened 4 months ago by corneliusroemer
  9

• Permissions of download not default of user

  #359 opened 4 months ago by joegeorgeson
  1

• Missing `assembly_info.submitter` field (assembly record)

  #355 opened 4 months ago by muffato
  3

• Unable to download PRJNA798058

  #351 opened 4 months ago by icyjayd
  4

• `dataformat` errors on non-latest version: `Dataformat doesn't recognize this input: Error: proto: (line 10:7): unknown field "uncompressedMd5Hex"`

  #353 opened 4 months ago by corneliusroemer
  4

• Accessing annotation from nuccore sequences

  #348 opened 5 months ago by manulera
  1

• Many REST API examples fail on the documentation page

  #347 opened 5 months ago by ialbert
  1

• Unable to locate the source code

  #345 opened 5 months ago by ialbert
  4

• Error in download

  #344 opened 5 months ago by edtankian97
  2

• Make more publication metadata available via `datasets download virus genome taxon 186538`

  #337 opened 5 months ago by corneliusroemer
  2

• Limited number of genome downloads for some taxon

  #340 opened 5 months ago by mkdevesh
  4

• GenBank or RefSeq

  #342 opened 5 months ago by mkdevesh
  1

• invalid or unsupported assembly accession: NC_001740

  #341 opened 5 months ago by ggl2151
  1

• `Submitter Names` lack spaces in `dataformat tsv virus-genome` compared to genbank file serialization

  #336 opened 5 months ago by corneliusroemer
  1

• request for changelog - do not understand release notes

  #334 opened 6 months ago by conchoecia
  1

• Truncated FNAs on non-dehydrated downloads of large datasets, please make it more clear that non-dehydrated downloads are dangerous

  #331 opened 6 months ago by joeweaver
  1

• datasets Version 16.7?

  #329 opened 6 months ago by balags1
  2

• `ncbi_dataset/data/data_report.jsonl` sometimes missing

  #328 opened 6 months ago by bernt-matthias
  2