conchoecia
PhD from UC Santa Cruz Bioinformatics Department. Genome Assembly. Marine Invertebrates. Evolution.
University of ViennaVienna, Austria
Pinned Repositories
brizzy
A program to easily take spectra with Ocean Optics spectrometers. It's a breeze to use.
chep
Calculate Heterozygosity with Pileup
cuttlery
CUTTlery: Codon Usage Table Tools and Bayesian determination of ORF protein coding-ness.
fasta_stats
standalone fasta_stats from Meraculous
fastest_rc_python
what is the fastest way to get the reverse complement of a DNA string in python
genome_assembly_pipelines
A collection of snakemake scripts to streamline genome annotation
gloTK
genomes of luminous organisms toolkit
hdb
Het De Bruijn graph - for finding heterozygous genome regions in k-mer space.
odp
oxford dot plots
pauvre
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
conchoecia's Repositories
conchoecia/odp
oxford dot plots
conchoecia/pauvre
Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
conchoecia/genome_assembly_pipelines
A collection of snakemake scripts to streamline genome annotation
conchoecia/chep
Calculate Heterozygosity with Pileup
conchoecia/cuttlery
CUTTlery: Codon Usage Table Tools and Bayesian determination of ORF protein coding-ness.
conchoecia/fasta_stats
standalone fasta_stats from Meraculous
conchoecia/gloTK
genomes of luminous organisms toolkit
conchoecia/brizzy
A program to easily take spectra with Ocean Optics spectrometers. It's a breeze to use.
conchoecia/fastest_rc_python
what is the fastest way to get the reverse complement of a DNA string in python
conchoecia/beroe_forskalii_mitogenome
Data related to the Beroe forskalii mitogenome manuscript.
conchoecia/Bioinformatics-tutorials
Tutorials on common bioinformatics skills for beginners
conchoecia/hdb
Het De Bruijn graph - for finding heterozygous genome regions in k-mer space.
conchoecia/hormiphora
Hormiphora californensis genome annotation and supplemental materials related to the genome assembly.
conchoecia/yabtap
Yet another bulk transcriptome assembly pipeline
conchoecia/chromsim
NA
conchoecia/nccb_website
website for Northern California Computational Biology group
conchoecia/bioawk
BWK awk modified for biological data
conchoecia/ConservFinder
conchoecia/cypridina.github.io
Test website for GLO
conchoecia/dev-notes
Development notes for bioinformatics and other things.
conchoecia/DPGB
dotplot + genome browser figure generator for genome assembly
conchoecia/emacs
Files used in customizing emacs
conchoecia/fast5_in_ref
Subset of fast5 files contained in a fastq, BAM, or SAM file.
conchoecia/gser
genome size estimation rarefaction
conchoecia/Illumina_trimming_pipeline
This pipeline trims HiSeq shotgun, Dovetail Chicago, and HiC data.
conchoecia/NCBI_assem_summary
Generate a summary spreadsheet for genomes from NCBI.
conchoecia/ncbigenomes
A script that QCs and plots how many chromosome-scale genomes are on NCBI
conchoecia/odontosyllis_undecimdonta_luciferase
This repository contains analyses required to recreate the analyses found in Schultz, Kotlobay, et al. 2018
conchoecia/rbh-specs
specifications for the rbh file formats used by the odp software.