Pinned Repositories
ansible-mac-dev-playbook
Provision a new mac using ansible
bioinformatics-career-survey
Survey of bioinformatics field
bioinformatics-zen
My Personal Website
dotfiles
Various configuration files
fluorescens-manuscript-figures
flux-balance-analysis-toolbox
A set of scripts I use for flux balance analysis of genome scale models
genomer
A Swiss army knife for genome projects
michael-barton-thesis
PhD thesis on the role of biosynthetic cost in molecular biology
organised_experiments
Example of how bioinformatics experiments can be organised using object relational mapping, rake files, and data validations
pubmed-boson
Query NCBI pubmed at the command line using ruby and boson.
michaelbarton's Repositories
michaelbarton/bioinformatics-career-survey
Survey of bioinformatics field
michaelbarton/genomer
A Swiss army knife for genome projects
michaelbarton/dotfiles
Various configuration files
michaelbarton/pubmed-boson
Query NCBI pubmed at the command line using ruby and boson.
michaelbarton/ansible-mac-dev-playbook
Provision a new mac using ansible
michaelbarton/bioinformatics-zen
My Personal Website
michaelbarton/fluorescens-manuscript-figures
michaelbarton/awesome-sequencing-benchmark-data
List of sequencing data available for benchmarking
michaelbarton/bioboxes-presentation
michaelbarton/bioinformatics-survey-analysis
michaelbarton/chromosome-pfluorescens-r124-genome
michaelbarton/chromosome-pfluorescens-r124-plasmid
michaelbarton/common-compass-stylesheet
Compass stylesheet I commonly use
michaelbarton/fluorescens-phylogeny
michaelbarton/genomer-plugin-summary
michaelbarton/genomer-plugin-validate
michaelbarton/genomer-plugin-view
michaelbarton/nucleotides-dockercon-presentation
The slides from the nucleotid.es talk at DockerCon
michaelbarton/survey-website
michaelbarton/auto-qc
michaelbarton/behave-command-line
Feature testing for command line tools
michaelbarton/Bend
A massively parallel, high-level programming language
michaelbarton/genomer-manuscript
michaelbarton/jgi-all-hands-presentation
michaelbarton/jupyer-pytest-api-examples
Jupyter notebook with pytest api examples
michaelbarton/k-armed-bandit-exercise
michaelbarton/notebook-fastq-zstd-compare
zstd-comparison
michaelbarton/notebook-zstd-fastq-comparison
Notebook for comparing FASTQ compressions sizes for zstd
michaelbarton/pachyderm
The Complete MLOps Stack
michaelbarton/udemy_seq2seq
Notebooks for following along to udemy seq2seq chatbot course