manulera
Working on ShareYourCloning - web app for FAIR cloning documentation.
University College LondonLondon
Pinned Repositories
cytosimGrammar
A grammar for cytosim
discussions_curation
A repository for more broad discussion of curation
genestorian_data_refinement
A project to extract genotype information from lab spreadsheets.
genestorian_data_refinement_GSoC
Genestorian data refinement information for possible GSoC2022 applicants
LeraRamirez2019
Files for Lera Ramirez and Nedelec 2019
posterUK-LocalBiocurationConference
A poster for 1st UK-Local Biocuration Conference. Held in EBI Hinxton in May 2022.
printSvg2Pdf
A simple bash script to print an svg to pdf without extra margins using headless chrome.
ShareYourCloning
A web application to generate molecular cloning strategies in json format, and share them with others.
UnivarScatter
A univariate scatter plot for matlab
YeastDatabase
A symfony application to manage a yeast collection
manulera's Repositories
manulera/ShareYourCloning
A web application to generate molecular cloning strategies in json format, and share them with others.
manulera/ShareYourCloning_backend
The backend application for ShareYourCloning
manulera/ShareYourCloning_frontend
The frontend application for ShareYourCloning
manulera/using_renv
An explanation on how to use renv package manager
manulera/biohackathons.github.io
International BioHackathon Directory of Events, Projects and Communities
manulera/biopython
Official git repository for Biopython (originally converted from CVS)
manulera/boilerplates
This is my personal template collection. Here you'll find templates, and configurations for various tools, and technologies.
manulera/CV
my CV
manulera/elabftw
:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.
manulera/example_drive_api
An example to use drive API in a simple html file
manulera/Krattenmacher_et_al_2024
Files to reproduce the simulations and theory in Krattenmacher et al. 2024
manulera/linkml
Linked Open Data Modeling Language
manulera/linkml-playground
linkml-playground
manulera/linkml_sqlmodel_issue
linkml_sqlmodel_issue
manulera/ontology_map_maker
Small SPA that makes ontology maps using mermaid
manulera/ove_playground
A minimal react app to play with teselagen's OVE
manulera/pombase_gtf_file
A script to convert pombase gff3 file into GFT format compatible with transvar.
manulera/pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
manulera/pySBOL2
A pure Python implementation of the SBOL standard.
manulera/pysbol3_playground
Playing around with pysbol3
manulera/react-drive-example
manulera/SBOL-utilities
Command-line utilities and scripts for manipulating SBOL data
manulera/sqlmodel
SQL databases in Python, designed for simplicity, compatibility, and robustness.
manulera/sqlmodel_tutorial
sqlmodel_tutorial
manulera/teemi
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
manulera/test_fastapi_boilerplate
manulera/test_SQLModel-boilerplate
manulera/testing-nbstripout
Trying the nbstripout hook
manulera/tg-oss
Teselagen Open Source modules
manulera/trying_teemi
Trying the teemi library