genomics-data
There are 73 repositories under genomics-data topic.
ncbi/datasets
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
mixOmicsTeam/mixOmics
Development repository for the Bioconductor package 'mixOmics '
ML-Bioinfo-CEITEC/genomic_benchmarks
Benchmarks for classification of genomic sequences
EBISPOT/DUO
Ontology for consent codes and data use requirements
HallLab/pandas-genomics
Pandas ExtensionDtypes for dealing with genomics data
ACDBio/AutoMR
An R script to perform two sample Mendelian randomization screening (with TwoSampleMR) for a custom summary statistic against a set of summary statistics from the IEU GWAS database.
ncherric/Iliad
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
ToledoEM/msigdf
Molecular Signatures Database (MSigDB) in a data frame
Sentieon/sentieon-dnaseq
Sentieon DNAseq
outbreak-info/R-outbreak-info
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
s1monj/nft-peppers
Generative Art NFTs from Genomic Data
furkanmtorun/gnomad_python_api
🧬 gnomAD Python API is used to obtain data from gnomAD (genome aggregation database).
jolespin/compositional
Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualizations.
IPK-BIT/divbrowse
A web application for interactive visualization and exploratory data analysis of variant call matrices
kpatel427/R-scripts
Miscellaneous R script to wrangle data and generate visualizations
theislab/cellrank_reproducibility
CellRank's reproducibility repository.
Sentieon/sentieon-dnascope-ml
Sentieon DNAscope + Machine Learning Model
vangiangtran/BWGS
2024 BreedWheat Genomic Selection pipeline
BioJulia/ReadDatastores.jl
Datastores for reads, not your papa's FASTQ files.
tseemann/kounta
🧮 🔢 Generate multi-sample k-mer count matrix from WGS
victorskl/genomic-bigdata-spark
Genomic BigData Warehousing with Apache Spark and LakeHouse Architecture
histolab/gdc-api-wrapper
Genomic Data Commons API wrapper
kyegomez/Prometheus
Welcome to Prometheus, the revolutionary AI model that allows you to generate DNA sequences for any creature you can imagine. Whether it’s a pink panda, an elephant-sized turtle, or a completely new lifeform from your wildest dreams, Prometheus decodes the mystery of biology and synthesizes genetic blueprints with precision.
lakhanp1/fungal_resources
R AnnotationDB resources like org.db, tx.db for various fungal species
HolubievIllya/Command-Line-Tools-for-Genomic-Data-Science
This repository contains the answers for coursera 's "Command Line Tools for Genomic Data Science"
outbreak-info/python-outbreak-info
Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info
bio-ontology-research-group/STARVar
STARVar:Symptom based Tool for Automatic Ranking of Variants using evidence from literature and genomes
HolubievIllya/Bioconductor-for-Genomic-Data-Science
This repository contains the answers for coursera 's "Bioconductor for Genomic Data Science"
GenomicsDB/GenomicsDB-R
Experimental R bindings to the native GenomicsDB library
omics-lab/VirusTaxo_Hierarchical
Implementation of https://doi.org/10.1016/j.ygeno.2022.110414
GenGrim76/Pareto-Optimal-GDC
:chart_with_downwards_trend: Disk Storage of Compressed k-mer Dictionaries, with or without Random Access in Main Memory.
jajokine/Genomics-and-High-Dimensional-Data
MITx - MicroMasters Program on Statistics and Data Science - Data Analysis: Statistical Modeling and Computation in Applications - Second Project
LotharukpongJS/phylomapr
Get precomputed gene age maps (phylomaps) in R
remytuyeras/HaploDynamics
A python library to develop genomic data simulators
AstraBert/simON-reads
simON-reads ("Simulate Oxford Nanopore Reads") is a simple yet powerful tool to generate fastq files containing MiniON-like long reads
yaacoo/multiPGS_py
multiPGS_py is a fast, simple and low-memory python method to calculate polygenic scores (PGS/PRS)