joeweaver

agent_based_biofilm_drift

Code, data, and text supporting a paper about quantifying drift vs selection using an agent-based biofilm model

bioinformatics_tools

Drop off point for any scripts or tools I write as I do bioinformatics work. Some may be half-baked, proceed with caution.

CFDPython

A sequence of Jupyter notebooks featuring the "12 Steps to Navier-Stokes" http://lorenabarba.com/

ctb-floc-size-control-analysis

Analysis code and smaller datasets for the paper "Controlling Aerobic Biological Floc Size using Couette Taylor Bioreactors"

get_to_know_phyloseq

An interactive Jupyter-based tutorial prepared for the de los Reyes lab, interested colleagues, and the North Carolina State University BIT 477/577 Metagenomics course

proces_seqs_qiime

Our in-lab shell script used todrive QIIME analyses of sequence data and produce a BIOM and phylo tree

sludge_preprocessing

Collection of scripts to preprocess microphotographs of sludge pictures prior to shap analysis. Mainly median averaging and devignetting.

SParMorIA-Sludge-Particle-Morphological-Image-Analysis

tidysol

TidySOL, a CLI for creating a tidy CSV from exported COMSOL data.

NUFEB-2

NUFEB development repository

joeweaver/agent_based_biofilm_drift

Code, data, and text supporting a paper about quantifying drift vs selection using an agent-based biofilm model

joeweaver/bioinformatics_tools

Drop off point for any scripts or tools I write as I do bioinformatics work. Some may be half-baked, proceed with caution.

joeweaver/CFDPython

A sequence of Jupyter notebooks featuring the "12 Steps to Navier-Stokes" http://lorenabarba.com/

joeweaver/sludge_preprocessing

Collection of scripts to preprocess microphotographs of sludge pictures prior to shap analysis. Mainly median averaging and devignetting.

joeweaver/ctb-floc-size-control-analysis

Analysis code and smaller datasets for the paper "Controlling Aerobic Biological Floc Size using Couette Taylor Bioreactors"

joeweaver/get_to_know_phyloseq

An interactive Jupyter-based tutorial prepared for the de los Reyes lab, interested colleagues, and the North Carolina State University BIT 477/577 Metagenomics course

joeweaver/proces_seqs_qiime

Our in-lab shell script used todrive QIIME analyses of sequence data and produce a BIOM and phylo tree

joeweaver/SParMorIA-Sludge-Particle-Morphological-Image-Analysis

joeweaver/tidysol

TidySOL, a CLI for creating a tidy CSV from exported COMSOL data.

joeweaver/.my-dotfiles

Attempting to keep my custom settings in sync between machines.

joeweaver/asmFoam

Github mirror of my bitbucket fork of cdegroot's asmFoam.

joeweaver/asmFoamTests

Github mirror of my bitbucket fork of Chris DeGroot's tests for asmFoam

joeweaver/bukubrow-host

Host application for the Bukubrow WebExtension

joeweaver/CBE30338

Chemical Process Control

joeweaver/check-dsga

Check a set of downloaded genomes using the ncbi datasets tool for consistency with expected # of sequences and total sequence length. I.E. sanity check against truncated assemblies.

joeweaver/git-filter-repo

Quickly rewrite git repository history (filter-branch replacement)

joeweaver/gitignore

The largest collection of useful .gitignore templates

joeweaver/imglib2

A generic next-generation Java library for image processing

joeweaver/instructor-training

Instructor Training

joeweaver/jekyll-academic

joeweaver/joeweaver.github.io

My website

joeweaver/meshlab

The open source mesh processing system

joeweaver/NUFEB

Official release of the NUFEB software

joeweaver/NUFEB-dev

NUFEB development repository

joeweaver/NUFEB-gui

joeweaver/NUFEB-tools

Tooling surrounding NUFEB run generation, management, and postprocessing.

joeweaver/nufebtools

Python package for working with NUFEB simulations

joeweaver/styles

Official repository for Citation Style Language (CSL) citation styles.

joeweaver/tui-rs

Build terminal user interfaces and dashboards using Rust

joeweaver/voronoi_analysis

voronoi analysis notebook for the cyanobacteria project