Pinned Repositories
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
benchmark-MeSS-CAMISIM
Nextflow pipeline to benchmark two shotgun metagenomic communities simulators
bioconda-recipes
Conda recipes for the bioconda channel.
diag_pipelines
Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.
farchaab
hackmd
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
assembly_finder
snakemake-powered cli to download genomes using NCBI datasets
MeSS
Snakemake pipeline for simulating shotgun metagenomic samples
zAMP
zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
farchaab's Repositories
farchaab/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
farchaab/benchmark-MeSS-CAMISIM
Nextflow pipeline to benchmark two shotgun metagenomic communities simulators
farchaab/bioconda-recipes
Conda recipes for the bioconda channel.
farchaab/diag_pipelines
Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.
farchaab/farchaab
farchaab/hackmd
farchaab/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
farchaab/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
farchaab/wobbler
Tool to get degenerate sites from primer alignments