metagenlab/zAMP

Issues

• KRONA plots not grouped by samples

  #50 opened 5 months ago by daulet-a
  0

• Use cli wrapper

  #41 opened 5 months ago by farchaab
  0

• Database processing with latest SILVA and greengenes versions

  #42 opened 6 months ago by farchaab
  2

• NameError in make_input_lists.py

  #44 opened 7 months ago by farchaab
  0

• Add tool versions and references

  #43 opened 7 months ago by farchaab
  0

• Key error when running the pipeline from SRA samples + SRA toolkits outdated

  #38 opened 9 months ago by valscherz
  0

• AttributeError with snakemake <7.32.4

  #36 opened 9 months ago by farchaab
  3

• Key error with DADA2

  #39 opened 9 months ago by valscherz
  0

• config file

  #31 opened 4 years ago by da2798
  0

• Dereplication of the V1V2 region of ref DB EzBioCloud

  #19 opened 5 years ago by valscherz
  1

• Copy reference databases hash codes for traceability.

  #29 opened 4 years ago by valscherz
  0

• Reads in the wrong direction are going through the DADA2 pipeline

  #22 opened 5 years ago by valscherz
  0

• Aldex2 transformed clr counts are not giving the expected output

  #21 opened 5 years ago by valscherz
  0

• Improve alpha diversity plots

  #4 opened 6 years ago by valscherz
  0

• Can't open /miniconda3/622b4111/lib/R/etc/ldpaths

  #1 opened 6 years ago by valscherz
  3

• A "Rplots.pdf" at the root of the project directory

  #2 opened 6 years ago by valscherz
  1

• Improve DADA2 script

  #3 opened 6 years ago by valscherz
  3

• Sample with less reads than the rarefaction cut-off are dropped

  #8 opened 6 years ago by valscherz
  2

• alpha diversity plot is looping over all facors several times

  #7 opened 6 years ago by valscherz
  0

• Database processing

  #6 opened 6 years ago by valscherz
  3

• Generate a sequence length plot with assignment for QC purpose

  #5 opened 6 years ago by valscherz
  0