farchaab

farchaab's Stars

• grp-bork/microbial_load_predictor

  R package to predict microbial loads

  Language:R11

• duerrsimon/bioicons

  A library of free open source icons for science illustrations in biology and chemistry

  Language:Vue1.4k78

• google-deepmind/alphafold3

  AlphaFold 3 inference pipeline.

  Language:Python5.7k668

• metagenlab/mummer2circos

  Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

  Language:Python10024

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.2k606

• nf-core/ampliseq

  Amplicon sequencing analysis workflow using DADA2 and QIIME2

  Language:Nextflow189123

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.8k424

• bioconvert/bioconvert

  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

  Language:Python37144

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C797169

• SlendyMilky/stationboard

  Page web affichant les horaires d'une gare voulue (🇨🇭)

  Language:JavaScript31

• biobakery/MetaPhlAn

  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

  Language:Python31386

• oschwengers/bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  Language:Python46257

• ChongLab/Inspector

  A tool for evaluate long-read de novo assembly results

  Language:Python424

• marbl/merqury

  k-mer based assembly evaluation

  Language:Shell29421

• mourisl/centrifuger

  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.

  Language:C++514

• bioconda/bioconda-recipes

  Conda recipes for the bioconda channel.

  Language:Shell1.7k3.3k

• wjwei-handsome/wgatools

  Whole Genome Alignment Tools

  Language:Rust1297

• wwood/singlem

  Novelty-inclusive microbial community profiling of shotgun metagenomes

  Language:Python13718

• bactopia/bactopia

  A flexible pipeline for complete analysis of bacterial genomes

  Language:Nextflow42373

• metagenlab/zDB

  zDB: comparative bacterial genomics made easy

  Language:HTML314

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k580

• metagenlab/assembly_finder

  snakemake-powered cli to download genomes using NCBI datasets

  Language:Python12

• metagenlab/MeSS

  Snakemake pipeline for simulating shotgun metagenomic samples

  Language:Python192

• yukiteruono/pbsim3

  PBSIM3: a simulator for all types of PacBio and ONT long reads

  Language:C++675

• hackmdio/codimd

  CodiMD - Realtime collaborative markdown notes on all platforms.

  Language:JavaScript9.4k1.1k

• chklovski/CheckM2

  Assessing the quality of metagenome-derived genome bins using machine learning

  Language:Scilab18221

• widdowquinn/find_differential_primers

  Code for design of diagnostic PCR primers, and metabarcoding markers.

  Language:Python6025

• nf-core/modules

  Repository to host tool-specific module files for the Nextflow DSL2 community!

  Language:Nextflow287735

• nf-core/tools

  Python package with helper tools for the nf-core community.

  Language:Python245192

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.8k642