muffato

ensembl-compara

The Ensembl Compara Perl API and SQL schema

ensembl-hive

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

ensembl-hive-docker-swarm

'Docker Swarm' implementation of Ensembl Hive Meadow interface

AltHapAlignR_py

Python script to combine BAM files and intersect them with a GTF file, used in jknightlab/AltHapAlignR

carla-git

Repo for useful scripts originally written by Carla. Only ibsub is maintained

command-launcher

Command launcher written in PyQT that adds a menu to the system tray

containers

Fork of BioContainers/containers. Only used to submit pull requests

docker-ensembl-linuxbrew-compara

Docker image with all dependencies to run the Ensembl Compara pipelines

pyEnsemblRest

Python wrapper of the Ensembl REST API

SSH-control-panel

Control panel for SSH tunnels and SSHFS mounts

muffato/command-launcher

Command launcher written in PyQT that adds a menu to the system tray

muffato/pyEnsemblRest

Python wrapper of the Ensembl REST API

muffato/SSH-control-panel

Control panel for SSH tunnels and SSHFS mounts

muffato/AltHapAlignR_py

Python script to combine BAM files and intersect them with a GTF file, used in jknightlab/AltHapAlignR

muffato/carla-git

Repo for useful scripts originally written by Carla. Only ibsub is maintained

muffato/containers

Fork of BioContainers/containers. Only used to submit pull requests

muffato/docker-ensembl-linuxbrew-basic-dependencies

Docker image with the basic dependencies for the Ensembl linuxbrew installation

muffato/docker-ensembl-linuxbrew-compara

Docker image with all dependencies to run the Ensembl Compara pipelines

muffato/ensembl-compara

The Ensembl Compara Perl API and SQL schema

muffato/ensembl-download-java

Java code to download genomes and orthologues from Ensembl

muffato/ensembl-hive

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

muffato/ensembl-hive-docker-swarm

'Docker Swarm' implementation of Ensembl Hive Meadow interface

muffato/ensembl-hive-htcondor

HTCondor Meadow for Ensembl Hive. Additional code to test GitHub workflows and packages

muffato/ensembl-hive-pbspro

'PBS Pro' implementation of Ensembl Hive Meadow interface

muffato/ensembl-hive-sge

SGE Meadow for Ensembl Hive

muffato/ensembl-hive-slurm

Slurm Meadow for Ensembl Hive

muffato/ensembl-mysql-monitor

Cron scripts to monitor the Ensembl Compara MySQL servers

muffato/ensembl-tools

Various tools that simplify working in Ensembl

muffato/ensembl-webcode-sandbox

Configuration files for an Ensembl sandbox website

muffato/ensj-healthcheck

Ensembl's Automated QC Framework

muffato/guiHive

Graphical interface for the eHive workflow manager

muffato/MitoHiFi

Fork of marcelauliano/MitoHiFi. Only used to submit pull requets

muffato/muffato

muffato/muffato.github.io

The Jekyll source code and content of my personal website

muffato/pairtools

Fork of open2c/pairtools. Only used to submit pull requests

muffato/phd-thesis-scripts

Backup of the scripts I used during my PhD thesis to build the Agora ancestral-genome reconstruction toolkit

muffato/pywaltrap

Python interface for the community detection program Walktrap

muffato/singularity-hpc

Fork of singularityhub/singularity-hpc. Only used to submit pull requests

muffato/snipmate.vim

Fork of msanders/snipmate.vim to keep my vim configuration

muffato/treebest

My git clone of Heng Li's treebest from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/ . Further modifications (fork from Ensembl/treebest) are on the ensembl_master branch