marwa38

Researcher with particular interest in aquatic microbiome and metabolome.

UCSDUSA

Pinned Repositories

academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Language:JavaScript12k 91 36442.7k
STAR
RNA-seq aligner
Language:C1.8k 85 2k505
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
Language:R468 40 2k142
RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
Language:C++410 22 195118
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
Language:R755 38 233153
ggplot2_workshop
Material for "Drawing Anything with ggplot2" workshop
0 0 00
marwa38.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Language:JavaScript00
NP_devStages_ampliseq
Nutritional Programming paper across developmental stages in context of microbiome
Language:HTML0 1 00
NP_intesParts_ampliseq
Nutritional Programming paper across intestinal regions in context of intestinal microbiome
Language:Jupyter Notebook0 1 00
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:Nextflow878 150 644699

marwa38/ggplot2_workshop
Material for "Drawing Anything with ggplot2" workshop
0 0 00
marwa38/marwa38.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Language:JavaScript00
marwa38/NP_devStages_ampliseq
Nutritional Programming paper across developmental stages in context of microbiome
Language:HTML0 1 00
marwa38/NP_intesParts_ampliseq
Nutritional Programming paper across intestinal regions in context of intestinal microbiome
Language:Jupyter Notebook0 1 00