ChiLiubio/microeco

Issues

• Error in `[.data.frame`(rres, , rownames(abund_table_sub_lda), drop = FALSE)

  #423 opened 21 days ago by shuchong200
  2

• Polite enquiry about "trans_network class"

  #426 opened 12 days ago by PeterPan0106
  2

• How to import external correlation matrix into res_cor_p?

  #427 opened 13 days ago by Liuyuxinn
  2

• trans_env$cal_autocor p values

  #425 opened 18 days ago by alberjo296
  2

• Issue with order_x

  #424 opened 18 days ago by susheelbhanu
  2

• FAPROTAX 1.2.10 is available, polite request of update in the package

  #422 opened 21 days ago by PeterPan0106
  5

• Filtering ASVs/OTUs based on FungalTraits

  #421 opened 25 days ago by alejorojas2
  1

• Errors using newly generated microtable from phyloseq components

  #418 opened a month ago by AngelicaMiraples
  2

• Question about plot_scatterfit

  #417 opened a month ago by meredithds
  3

• Modifying colors to cal_autcor

  #416 opened a month ago by Manso002
  1

• LEFSE result inconsistent with taxa distribution among groups

  #415 opened a month ago by jamorillo
  4

• Error in lefse$res_diff is NULL

  #414 opened a month ago by JamShaw229
  0

• doubts about taxonomy heatmap

  #413 opened a month ago by jamorillo
  2

• trans_diff$new with method "DESeq2" causes error.

  #412 opened a month ago by 145218415
  2

• chorddiagram : cal_sum_links

  #406 opened a month ago by Ananya1006
  9

• Problem with representation of dbRDA

  #398 opened 2 months ago by alberjo296
  15

• Error while importing HUMAnN unstratified table

  #375 opened 4 months ago by anw-sh
  6

• lefse analysis questions and plotting without tags

  #411 opened a month ago by Roctry
  3

• when run trans_alpha$new, Skip 'Chao1', 'ACE' and 'Observed' ...

  #410 opened a month ago by wanjinhu
  2

• Inconsistent results from workflow in tutorial 4.2 trans_venn class

  #409 opened 2 months ago by jarrodscott
  3

• get_node_table failed to calculate node roles for all taxa

  #397 opened 2 months ago by scilexenko
  3

• Plot_diff_abund improvement

  #380 opened 2 months ago by DpennaS
  1

• humann2meco -Some (unclassified) entries in the meco OTU table are assigned with negative entries

  #388 opened 2 months ago by barnali-waugh
  3

• How do CCA calculations use the first 10 Phylum/Genus?

  #386 opened 2 months ago by makerer5
  3

• Mantel test and Pearson's correlation

  #393 opened 3 months ago by johagcoria
  1

• Error in rbind(deparse.level, ...) : numbers of columns of arguments do not match

  #394 opened 2 months ago by wskaerc
  2

• Is it possible to use microeco to screen for 'rare/abundant taxa'?

  #402 opened 2 months ago by makerer5
  3

• Error in `[.data.frame`(rres, , rownames(abund_table_sub_lda), drop = FALSE)

  #408 opened 2 months ago by hlwCoBi
  4

• Get -Inf LDA value when use lefse analysis

  #407 opened 2 months ago by monaye745
  5

• How to extract a subset based on the name of a node using subset_network？

  #404 opened 2 months ago by Liuyuxinn
  8

• chorddiagram : cal_sum_links

  #405 opened 2 months ago by Ananya1006
  0

• Some questions about trans_network class

  #401 opened 2 months ago by Liuyuxinn
  5

• How can I do venn/β-diversity analysis at higher taxonomic level

  #403 opened 2 months ago by jieyin2023
  1

• LEfSe - subgroup check did not remove non-significant taxa

  #399 opened 2 months ago by NNTLe
  8

• SpiecEasi::spiec.easi in cal_network doesn't seem to change a thing

  #396 opened 2 months ago by scilexenko
  2

• get correlation matrix from trans_network$new

  #395 opened 2 months ago by scilexenko
  2

• Error in cal_spec_func(fungi_database="FUNGuid"

  #392 opened 3 months ago by AlbertoBernacchi
  1

• Trans Gamma diversity, sample dots not seen within the confidence interval

  #391 opened 3 months ago by CYBERBOY1210
  2

• NA in Relative abundance graph

  #389 opened 3 months ago by AnnaMarizzi
  3

• Clarity on the "use_group_list = TRUE" in trans_func functions

  #390 opened 3 months ago by biazen123
  1

• LEfSe's results look different than before

  #387 opened 3 months ago by wfgui
  9

• The plot generated by the 'plot_diff_cladogram' function appears unusual and difficult to interpret.

  #385 opened 3 months ago by lzuChengweiZhang
  3

• Error while differential analysis with aldex2 with humann stratified files

  #383 opened 4 months ago by RoyDibakar
  14

• Error in lefse$plot_diff_cladogram

  #382 opened 3 months ago by YP-Hao
  3

• Adding exting network

  #373 opened 4 months ago by DpennaS
  9

• Query Regarding Paired Sample Analysis with `trans_diff` Function

  #379 opened 4 months ago by learn-lx-zhu
  3

• Error in trans_diff$new by method = "lefse"

  #377 opened 4 months ago by cheng-xd
  8

• Plotting Relative Abundance Graph with 3 Factors

  #376 opened 4 months ago by amandamanully
  1

• Taxa labels dont show up in plot_diff_cladogram

  #374 opened 4 months ago by jackqio
  2

• Correlation of an ASV with various environmental variables

  #372 opened 5 months ago by guianrey
  1