ThibauldMichel

Basic_Hyb_Seq_Assembly

A simple Hyb_Seq pipeline for conservatively called consensus sequence

BLAST_metabarcoding

DADA2_Phyloseq

A DADA2 pipeline using rbcl markers libraries and a Phyloseq script to output graphical results.

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

KewHybSeqWorkshop

Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.

phyluce

software for UCE (and general) phylogenomics

Plant.ID

Plant.ID: Molecular Identification of Plants

ROH-pipeline

This pipeline has been developed to estimate inbreeding levels and recent demographic events with Runs of Homozygosity (ROH) from single herbarium specimens.

Species-delimitation-using-BEAST

DISSECT trials using data from Species delimitation without prior knowledge, Toprak (2016)

Targeted_enrichment

Scripts and outline of pipeline to generate robust consensus sequence from targeted captured reads

ThibauldMichel/Basic_Hyb_Seq_Assembly

A simple Hyb_Seq pipeline for conservatively called consensus sequence

ThibauldMichel/BLAST_metabarcoding

ThibauldMichel/DADA2_Phyloseq

A DADA2 pipeline using rbcl markers libraries and a Phyloseq script to output graphical results.

ThibauldMichel/dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

ThibauldMichel/KewHybSeqWorkshop

Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.

ThibauldMichel/phyluce

software for UCE (and general) phylogenomics

ThibauldMichel/Plant.ID

Plant.ID: Molecular Identification of Plants

ThibauldMichel/ROH-pipeline

This pipeline has been developed to estimate inbreeding levels and recent demographic events with Runs of Homozygosity (ROH) from single herbarium specimens.

ThibauldMichel/Species-delimitation-using-BEAST

DISSECT trials using data from Species delimitation without prior knowledge, Toprak (2016)

ThibauldMichel/Targeted_enrichment

Scripts and outline of pipeline to generate robust consensus sequence from targeted captured reads