Pinned Repositories
basic-programming-LauraSkak
basic-programming-LauraSkak created by GitHub Classroom
bed-1-lauraskak
bed-1-lauraskak created by GitHub Classroom
bed-2-lauraskak
bed-2-lauraskak created by GitHub Classroom
flopp
flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
pomegranate
Fast, flexible and easy to use probabilistic modelling in Python.
Local-rephaser
A local rephaser build to deal with difficult to phase regions with duplications.
Modification-count-workflow
This workflow uses Dorado, Samtools, Clair3, WhatHap and Modkit to extract a modification count table containing information for each relevant site.
MetH5Format
HDF5-based container format for Methylation calls from long reads
whatshap
Read-based phasing of genomic variants, also called haplotype assembly
LauraSkak's Repositories
LauraSkak/Modification-count-workflow
This workflow uses Dorado, Samtools, Clair3, WhatHap and Modkit to extract a modification count table containing information for each relevant site.
LauraSkak/Local-rephaser
A local rephaser build to deal with difficult to phase regions with duplications.