Pinned issues
Issues
- 0
- 2
Could not split CESAR jobs
#121 opened by AgustoLuz - 0
- 13
Bed file error
#156 opened by LliliansCalvo - 0
CDS length not divisible 3
#182 opened by DEYANIK - 20
old Java version on run_test.sh micro ValueError: Chain results file TOGA/micro_test_out/temp/chain_results_df.tsv is empty! Abort
#131 opened by SomePersonSomeWhereInTheWorld - 3
Exon related statistics
#180 opened by wang748 - 5
The certainty of uncertain states in TOGA
#181 opened by molinfzlvvv - 1
Treatment of different gene sets
#178 opened by molinfzlvvv - 1
Script to convert gtf file to TOGA input
#177 opened by DustinSokolowski - 4
support for transferring miRNA annotations?
#173 opened by lichennan123 - 3
TOGA as a tool to age genes?
#179 opened by DiegoSafian - 41
- 5
how to interpret the output plot
#176 opened by aaannaw - 1
Error in Step 8, merge_cesar_jobs: CRITICAL: could not extract any bed lines from the CESAR output, abort
#175 opened by shuifeng1988 - 2
Some individual CESAR jobs crashed in TOGA.
#174 opened by ZhaoHang-bio - 4
The different results of the same gene in two assemblies
#171 opened by txfc - 0
run with multiple query genomes
#172 opened by philge - 1
Questions about the outputs of TOGA "loss_summ_data.tsv" and "proteinAlignments.fa"
#170 opened by SWei2333 - 1
Output file interpretation
#162 opened by molinfzlvvv - 5
Error at STEP 9
#166 opened by molinfzlvvv - 3
The question of inactivate mutation identification
#163 opened by txfc - 2
TOGA annotation of sex chromosomes
#167 opened by smorzechowski - 1
Operational problems with CESAR2.0
#165 opened by molinfzlvvv - 3
Some nextflow processes died
#161 opened by molinfzlvvv - 10
twobit sizes do not match
#160 opened by lpnunez - 4
Index error with plot_mutations.py
#148 opened by smorzechowski - 7
- 4
Input file preparation
#158 opened by molinfzl - 1
Question about output alignments
#157 opened by d6948739 - 9
Assembly_stats:KeyError: "None of [Index(['vs_/home/vlamba/1March-Query4-gene-loss/'], dtype='object')] are in the [index]"
#155 opened by vinitamehlawat - 7
Some genes lost in the loss_summ_data.tsv
#154 opened by txfc - 10
- 4
- 6
- 4
Questions about custom training of XGBoost models
#149 opened by fuesseler - 10
- 4
duplicate transcript names in query_annotation.bed
#147 opened by fuesseler - 2
TOGA stops after CESAR checking results
#122 opened by giovannaVeiga - 0
chain_results_df.tsv Empty! Abort.
#144 opened by TinaSalehiT - 2
- 9
Implementation of additional processing steps in postoga following current TOGA dir structure
#135 opened by alejandrogzi - 1
TODO: argument to control the cluster queue name
#138 opened by kirilenkobm - 3
Directory is deleted at the end
#132 opened by dianamosa - 3
ValueError: Error! There are 57105 transcripts in the bed file absent in the isoforms file! There are the transcripts (first 100)
#134 opened by vinitamehlawat - 1
number of founded processed pseudogenes is different from anotation registred
#125 opened by jesusdeivid - 4
Can I merge orthologsClassification.tsv of some species to compile an orthology table for the species
#133 opened by lnyawen - 17
Unexpectedly Low BUSCO Scores in TOGA Alignment: Potential Parameter Issue with lastz?
#123 opened by ZhaoHang-bio - 3
- 0