Pinned Repositories
amp-rnaseq
Code for reprocessing the RNAseq data from AMP-AD.
Assemblathon
Code that was used in the Assemblathon 1 and 2 projects
Brain_Reg_Net
Gene regulatory network from mRNA data of brain
codes
Codes I have written
Comparative-Annotation-Toolkit
CovariateAnalysis
deinterlace
Deinterlaces paired-end FASTQ files into first and second strand files.
ibse-iitm.github.io
github.io pages
Intro_to_NGS
lichen_genomics
course material for the workshop on lichen genomics 2 in graz
philge's Repositories
philge/amp-rnaseq
Code for reprocessing the RNAseq data from AMP-AD.
philge/Assemblathon
Code that was used in the Assemblathon 1 and 2 projects
philge/Brain_Reg_Net
Gene regulatory network from mRNA data of brain
philge/codes
Codes I have written
philge/Comparative-Annotation-Toolkit
philge/CovariateAnalysis
philge/deinterlace
Deinterlaces paired-end FASTQ files into first and second strand files.
philge/ibse-iitm.github.io
github.io pages
philge/Intro_to_NGS
philge/lichen_genomics
course material for the workshop on lichen genomics 2 in graz
philge/metagenomics-workshop
Metagenomics Workshop
philge/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
philge/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
philge/orphan-prediction
methods for orphan gene prediction paper optimization
philge/rbc-dsai-iitm.github.io
Homepage for the Robert Bosch Centre for Data Sciences & Artificial Intelligence at IIT Madras
philge/repurpose
Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers
philge/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
philge/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
philge/TALON
Technology agnostic long read analysis pipeline for transcriptomes
philge/wes-relation
philge/WhirlwindTourOfPython
The Jupyter Notebooks behind my OReilly report, "A Whirlwind Tour of Python"