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make_lastz_chains
Portable solution to generate genome alignment chains using lastz
TOGA
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
i-ADHoRe
i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.
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