rcastelo
biostatistics, machine learning, genetics, genomics, R/Bioconductor
Universitat Pompeu FabraBarcelona
Pinned Repositories
atena
Analysis of transposable elements
awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
EuroBioC2025
Website of the European Bioconductor Conference 2025
GenomicScores
Provide support to store and retrieve genomic scores associated to nucleotide positions along a genome
GSVA
Gene set variation analysis
qpgraph
Estimate gene and eQTL networks from high-throughput expression and genotyping assays
VariantFiltering
Filter genetic variants using different criteria such as inheritance model, conservation, etc.
rcastelo's Repositories
rcastelo/GSVA
Gene set variation analysis
rcastelo/GenomicScores
Provide support to store and retrieve genomic scores associated to nucleotide positions along a genome
rcastelo/atena
Analysis of transposable elements
rcastelo/VariantFiltering
Filter genetic variants using different criteria such as inheritance model, conservation, etc.
rcastelo/EuroBioC2025
Website of the European Bioconductor Conference 2025
rcastelo/qpgraph
Estimate gene and eQTL networks from high-throughput expression and genotyping assays
rcastelo/awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
rcastelo/bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
rcastelo/bioc_coc_multilingual
Multilingual version of the Bioconductor Code of Conduct
rcastelo/BiocManager
CRAN Package For Managing Bioconductor Packages
rcastelo/BiocPkgTools
Computable build reports, package metadata, and download stats from the Bioconductor project
rcastelo/BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
rcastelo/gDNAx
Diagnostics for assessing genomic DNA contamination in RNA-seq data
rcastelo/Category
Category Analysis
rcastelo/covidcatwatch
rcastelo/GenomicAlignments
Representation and manipulation of short genomic alignments
rcastelo/graph
graph: A package to handle graph data structures
rcastelo/phastCons30way.UCSC.hg38
rcastelo/rhdf5
Package providing an interface between HDF5 and R
rcastelo/ScaledMatrix
Clone of the Bioconductor repository for the ScaledMatrix package.
rcastelo/wrangling-genomics