Bioconductor/GenomicAlignments

Issues

• summarizeOverlaps warnings

  #36 opened 9 days ago
  3

• Error in isCompatibleWithSkippedExons() for single-end read alignments w/ more than 3 junctions

  #33 opened a year ago
  0

• When I use the readGAlignments .

  #31 opened a year ago
  2

• Differences in reads' base content with IGV.

  #30 opened a year ago
  2

• Permission for SweaveToRmd

  #27 opened 2 years ago
  9

• 'cigar_buf' overflow ERROR when calling GenomicAlignments::cigarNarrow()

  #23 opened 2 years ago
  2

• cigarNarrow_segmentationFault

  #19 opened 2 years ago
  3

• BiocParallel errors

  #18 opened 2 years ago
  3

• reference to query location

  #17 opened 2 years ago
  1

• summarizeOverlap performance issues and crashes.

  #16 opened 3 years ago
  7

• install error

  #15 opened 3 years ago
  1

• S4Vectors

  #14 opened 3 years ago
  1

• Implementation of queryLoc2refLoc() function

  #13 opened 4 years ago
  2

• mapFromAlignments() and soft-clipping

  #12 opened 5 years ago
  6

• readGAlignmentPairs causes Floating point exception (core dumped)

  #11 opened 5 years ago
  21

• fail on r-devel

  #10 opened 5 years ago
  4

• summarizeJunctions with genome fails if no junction exists

  #8 opened 5 years ago
  1

• Clarify Strandedness Options for SummarizeOverlaps in Documentation

  #7 opened 5 years ago
  1

• Clarify Counting of Query-Spanning Reads in Documentation

  #6 opened 5 years ago
  0

• Non-graceful, when trying to access metadata column from GAlignment object

  #5 opened 5 years ago
  1

• Performance of readGAlignmentPairs with inter-chromosomal pairs

  #4 opened 6 years ago
  0

• Error using granges with unused argument on.discordant.seqnames

  #3 opened 6 years ago
  1

• incomplete use of bamRanges() for summarizeOverlaps method for BamViews

  #2 opened 7 years ago
  0

• Strand-related warning in summarizeOverlaps() persists in some cases

  #1 opened 7 years ago
  2