Bioconductor/GenomicAlignments

Implementation of queryLoc2refLoc() function

Closed this issue · 2 comments

Is there a schedule for the implementation of those functions?

queryLocs2refLocs()
queryLoc2refLoc()

I saw a forum post from 4 years ago with the same question.
Do you take pull requests for this?
Best, Caspar

Hi,

Since the addition of mapFromAlignments() and pmapFromAlignments() to the package, it's not clear that there is still a need for queryLocs2refLocs() or queryLoc2refLoc(). Do you have a use case that cannot be handled with mapFromAlignments() or pmapFromAlignments() but that would be handled with queryLocs2refLocs() or queryLoc2refLoc()?

Thanks,
H.

Hi,

thanks for the reply. You are right, I can solve my problem using the mapFromAlignments() function.
Best, Caspar