Pinned Repositories
athena
Minimalist static blog generator written in Python
barcoding
Lima - Demultiplex Barcoded PacBio Samples
BForest
bioconda-recipes
Conda recipes for the bioconda channel.
expander
Identify and characterize repeat expansions in long read data
HybridAssembly
Nextflow pipeline for hybrid assembly combining short read (Illumina) and long read (Nanopore) data.
nanomod
Extract base modification informations from Fast5 files
nf-core-denovohybrid
See the main fork of this repository here >>
plasmIDent
Pipeline for identification of circular plasmids from genome assemblies and resistance gene annotation
megLR
Snakemake workflow for comprehensive ONT analysis
caspargross's Repositories
caspargross/HybridAssembly
Nextflow pipeline for hybrid assembly combining short read (Illumina) and long read (Nanopore) data.
caspargross/plasmIDent
Pipeline for identification of circular plasmids from genome assemblies and resistance gene annotation
caspargross/expander
Identify and characterize repeat expansions in long read data
caspargross/nf-core-denovohybrid
See the main fork of this repository here >>
caspargross/athena
Minimalist static blog generator written in Python
caspargross/barcoding
Lima - Demultiplex Barcoded PacBio Samples
caspargross/BForest
caspargross/bioconda-recipes
Conda recipes for the bioconda channel.
caspargross/bionano-docker
Docker image for BioNano Access software
caspargross/nanomod
Extract base modification informations from Fast5 files
caspargross/bonito
A PyTorch Basecaller for Oxford Nanopore Reads
caspargross/Carousel
caspargross/caspargross.github.io
Personal Landing Page
caspargross/flair
Full-Length Alternative Isoform analysis of RNA
caspargross/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
caspargross/hapdup
!FORK! container image: https://hub.docker.com/repository/docker/caspargross/hapdup
caspargross/LandClimTools
R-Package to work with LandClim
caspargross/luxpark
caspargross/megSAP
a Medical Genetics Sequence Analysis Pipeline
caspargross/methylartist
Tools for plotting methylation data in various ways
caspargross/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
caspargross/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
caspargross/nanoplotter
Plotting functions of Oxford Nanopore sequencing data with adapted plotting themes.
caspargross/nextflow
Fork: Runs with internal Proxy with HTTP_AUTH
caspargross/ont_sv
Structural variant predicition with Nanopore reads
caspargross/proteinView3D
caspargross/RaGOO
Fast Reference-Guided Scaffolding of Genome Assembly Contigs
caspargross/Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
caspargross/truvari
Structural variant comparison tool for VCFs
caspargross/zonator
Utility tools for for anybody interested in using a familiar tool (R) in setting up Zonation runs and managing Zonation results.