Pinned Repositories
aiDIVA
Pathogenicity prediction and prioritization of genetic variants.
ClinCNV
Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
IGV_genome_ensembl
A IGV reference genome annotated with Ensembl gene/transcript info
megLR
Snakemake workflow for comprehensive ONT analysis
megSAP
a Medical Genetics Sequence Analysis Pipeline
ngs-bits
Short-read sequencing tools
plasmIDent
StraglrOn
Straglr Addon von Thomas Braun
umiVar
Code-refactoring of umiVar tool.
umiVar_legacy
cfDNA variant caller as implemented by Fran
Institute of Medical Genetics and Applied Genomics's Repositories
imgag/ngs-bits
Short-read sequencing tools
imgag/ClinCNV
Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
imgag/megSAP
a Medical Genetics Sequence Analysis Pipeline
imgag/plasmIDent
imgag/aiDIVA
Pathogenicity prediction and prioritization of genetic variants.
imgag/megLR
Snakemake workflow for comprehensive ONT analysis
imgag/IGV_genome_ensembl
A IGV reference genome annotated with Ensembl gene/transcript info
imgag/aiDIVA-Training
imgag/StraglrOn
Straglr Addon von Thomas Braun
imgag/umiVar
Code-refactoring of umiVar tool.
imgag/umiVar_legacy
cfDNA variant caller as implemented by Fran
imgag/aiDIVA-Simulation
imgag/bioconda-recipes
Conda recipes for the bioconda channel.
imgag/c.ATG_Documentation
imgag/COVID-19
imgag/expression-analysis-smk
Robust reproducible differential expression analysis based on edgeR with components in R and Python as a snakemake pipeline
imgag/htslib
C library for high-throughput sequencing data formats
imgag/MultiQC
IMGAG Fork, using custom modules
imgag/PET_LIT_study
imgag/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
imgag/NGS_data_exchange
Data formats for NGS data exchange.
imgag/pedigreejs
A web tool for building pedigrees, https://ccge-boadicea.github.io/pedigreejs/
imgag/RFC1_repeat_screening
Screening tool for RFC1/CANVAS repeat in WES samples.
imgag/sca4_project
imgag/scarHRD
Fork of scarHRD to fix bugs.
imgag/Webservice_UploadBRCA2006
Upload to HerediCare/BRCA2006 database