imgag/ngs-bits

Issues

• GSvar: add study to SampleSearch output

  #571 opened 3 months ago by leonschuetz
  0

• HtsLib possibly cannot read BAM/CRAM files via proxy

  #568 opened 3 months ago by ubuntolog
  3

• Replace `vcfbreakmulti` with ngs-bits VcfBreakMulti

  #569 opened 3 months ago by leonschuetz
  0

• Measure file read speed with S3 bucket mounted as a folder and directly from S3

  #570 opened 3 months ago by ubuntolog
  0

• Bug: GSvar crashes on opening IGV of multisample

  #565 opened 3 months ago by leonschuetz
  0

• NGSD: add option to flag HPO term as primary phenotype

  #566 opened 3 months ago by marc-sturm
  0

• GSvar - PS tab: add samples with same patient ID to related samples table

  #533 opened 4 months ago by marc-sturm
  0

• KASP: add last update date and user

  #532 opened 4 months ago by marc-sturm
  0

• GSvarServer: update SGE status

  #556 opened 4 months ago by marc-sturm
  1

• Send a link to the demo instance to all

  #514 opened 4 months ago by ubuntolog
  0

• EC2 instance console output monitoring

  #538 opened 4 months ago by ubuntolog
  1

• Mac OS github build fails due to the Python update

  #525 opened 4 months ago by ubuntolog
  0

• NGSDMaintain: move to GSvar client

  #563 opened 4 months ago by marc-sturm
  0

• Endpoint for getting processed sample hash from the server

  #554 opened 4 months ago by ubuntolog
  1

• Add a flag "use_proxy_for_gsvar_server" that will force the use of proxy from the settings

  #555 opened 4 months ago by ubuntolog
  0

• GSvar: speed-up edit widget of processed sample

  #540 opened 4 months ago by marc-sturm
  0

• Create a code to run a maintenance process on timer every minute

  #557 opened 4 months ago by ubuntolog
  0

• update ClinVar API

  #528 opened 8 months ago by marc-sturm
  1

• NovaSeqX: Add flag for processed samples which will be re-sequenced

  #546 opened 4 months ago by leonschuetz
  0

• GSvar: multi-sample report

  #522 opened 8 months ago by marc-sturm
  0

• Process correctly all PathTypes on the server

  #551 opened 5 months ago by ubuntolog
  0

• Fix contamination detection in MappingQC

  #547 opened 5 months ago by leonschuetz
  0

• Server log rotation does not work in production

  #539 opened 5 months ago by ubuntolog
  0

• Transition to Sqlite for storing session information

  #543 opened 5 months ago by ubuntolog
  0

• Confirm that the instructions for building ngs-bits from sources (Linux/MacOS) still works

  #545 opened 5 months ago by luskx016
  2

• GSvar: create filter set for CNVs in LR samples

  #535 opened 6 months ago by leonschuetz
  0

• REPEAT_EXPANSIONS is missing from PathTypes in NGSD

  #542 opened 6 months ago by ubuntolog
  1

• GSVar: Make `KeepFastq` of NovaSeqX SampleSheet export configurable in settings

  #529 opened 6 months ago by BeneKenobi
  2

• Error handling for Celery task chains

  #537 opened 7 months ago by ubuntolog
  0

• Make use of AWS Route53 API to create subdomains for new customers

  #526 opened 7 months ago by ubuntolog
  0

• sample search: add samples with variants only

  #530 opened 7 months ago by marc-sturm
  1

• get sample sender from GenLab

  #536 opened 7 months ago by marc-sturm
  0

• GSvar: added sequencing platform and read length to technical report

  #531 opened 7 months ago by marc-sturm
  1

• GSvar: load default filter based on processing system

  #534 opened 7 months ago by leonschuetz
  0

• MappingQC error related to FASTA index

  #527 opened 8 months ago by sjaenick
  1

• GSvar fails to restart an analysis when "processing system" is "none"

  #503 opened 8 months ago by ubuntolog
  1

• Make a decision on subdomains for individual instances of GSvarServer for organizations

  #518 opened 8 months ago by ubuntolog
  0

• Compile Error - undefined reference to `curl_easy_getinfo@CURL_OPENSSL_4’

  #524 opened 8 months ago by HandsYe
  3

• Impressum page

  #513 opened 8 months ago by ubuntolog
  1

• LongReads: Add long-read support for SampleSimilarity

  #515 opened 9 months ago by leonschuetz
  2

• LongReads: add long-read support for SampleGender and GSvar

  #521 opened 9 months ago by leonschuetz
  1

• Upload API for read data

  #520 opened 9 months ago by ubuntolog
  0

• Working demo of megSAP on AWS

  #519 opened 9 months ago by ubuntolog
  0

• Download page of GSvar client on gscloud.imgag.de

  #512 opened 9 months ago by ubuntolog
  0

• Add dialog showing interpretability of target region

  #517 opened 9 months ago by marc-sturm
  0

• GSvar: make column order configurable

  #507 opened 10 months ago by marc-sturm
  0

• wrap all tools used in megSAP in singularity

  #511 opened 10 months ago by ubuntolog
  0

• Improve link to LOVD

  #509 opened 10 months ago by ifokkema
  4

• Display diff between the current and default configuration while deploying the server

  #510 opened 10 months ago by ubuntolog
  0

• GSvar: refactoring of gene tab

  #508 opened 10 months ago by marc-sturm
  0