HtsLib possibly cannot read BAM/CRAM files via proxy

Question

Closed this issue 3 months ago · 3 comments

Needs to be tested withing UKT and from outside

Answer 1 · 2024-08-14T14:19:29.000Z

Works outside of UKT over direct connection (without proxy)

Answer 2 · 2024-08-14T14:20:53.000Z

Inside UKT the proxy server prevents HtsLib requests from reaching GSvar server running outside

Answer 3 · 2024-08-15T10:10:47.000Z

A fix is found. On Windows GSvar needs to be launched with specific environment variables:

set https_proxy=LOGIN:PASSWORD@PROXY_ADDRESS:PROXY_PORT
set http_proxy=LOGIN:PASSWORD@PROXY_ADDRESS:PROXY_PORT