imgag/ClinCNV

Issues

• ERROR : Somtic samples run

  #49 opened a month ago by ajain195
  3

• Proposed patch for ?no gene name

  #46 opened a month ago by signalbox2
  1

• Error in returnAllowedChromsBaf -> returnBAlleleFreqs

  #48 opened 4 months ago by sunyihong
  8

• [Ends of chrom] argument is of length zero

  #47 opened 10 months ago by RochaLAJ
  2

• Make available via Bioconda

  #45 opened a year ago by FriederikeHanssen
  2

• Error in 1:ncol(toyCoverageGermlineCohort) : argument of length 0 Calls: source -> withVisible -> eval -> eval

  #44 opened a year ago by limww
  8

• Feature request: add to conda

  #43 opened a year ago by matthdsm
  3

• clincnv runs an error about family samples

  #28 opened a year ago by heweihuang
  2

• Error in 1:ncol(coverages) : argument of length 0 Calls: gc_and_sample_size_normalise

  #41 opened a year ago by kaqisekuzi
  1

• Trios sample ID

  #42 opened a year ago by sunyihong
  6

• How to determine the cnv type

  #40 opened a year ago by kaqisekuzi
  6

• error about clinCNV.R :

  #39 opened 2 years ago by kaqisekuzi
  3

• #How to create my.bed file for WGS

  #38 opened 2 years ago by kaqisekuzi
  10

• error cannot open Rplot.pdf

  #37 opened 2 years ago by marc-sturm
  0

• Offtarget coverage on targeted gene panel germline samples

  #36 opened 2 years ago by jpuntomarcos
  1

• Parameter values

  #35 opened 2 years ago by jpuntomarcos
  1

• Bugfix PAR regions + speeding up

  #34 opened 2 years ago by GermanDemidov
  0

• Questions about the raw output file(s)'s columns

  #33 opened 2 years ago by Jolleboll
  2

• Argument is of length zero

  #32 opened 2 years ago by Jolleboll
  9

• "the condition has length > 1"

  #30 opened 2 years ago by Jolleboll
  11

• No error if BAF file is not readable

  #31 opened 2 years ago by marc-sturm
  0

• Is it possible to add mitochondrial DNA cytoband information?

  #29 opened 2 years ago by Krutik6
  2

• Running clinCNV reports an error

  #27 opened 3 years ago by heweihuang
  1

• No error if input regions are outside the cytobands.txt file

  #26 opened 3 years ago by marc-sturm
  1

• Wrong warning

  #25 opened 3 years ago by marc-sturm
  1

• Error in writeLines [...] cannot open the connection

  #20 opened 3 years ago by frmacomber
  3

• Failed in Determine.gender

  #23 opened 3 years ago by lmanchon
  7

• How to prepare WES bed file without ngs-bit ?

  #22 opened 3 years ago by lmanchon
  2

• How to format bed file for WES

  #21 opened 3 years ago by lmanchon
  8

• SEG output: indicate invalid regions

  #19 opened 5 years ago by marc-sturm
  2

• Handling of PAR region

  #12 opened 5 years ago by marc-sturm
  1

• Override sample gender

  #14 opened 5 years ago by marc-sturm
  5

• somatic run error

  #18 opened 5 years ago by milkcookie
  2

• Documentation changes

  #1 opened 6 years ago by marc-sturm
  0

• Handling of centromer regions

  #13 opened 5 years ago by marc-sturm
  1

• Genes output

  #15 opened 5 years ago by marc-sturm
  1

• ClinCNV creates file not neccessary

  #10 opened 5 years ago by axelgschwind
  0

• Release 1.16 changes

  #11 opened 5 years ago by marc-sturm
  0

• Documentation improvements

  #9 opened 5 years ago by marc-sturm
  1

• Order of the output CNVs

  #8 opened 6 years ago by axelgschwind
  1

• Remove (first) somatic folder and move everything in root folder

  #7 opened 6 years ago by marc-sturm
  1

• number formatting

  #4 opened 6 years ago by marc-sturm
  0

• Code refactoring

  #2 opened 6 years ago by marc-sturm
  0

• Germline algo changes

  #3 opened 6 years ago by marc-sturm
  0