bioinformatics-algorithms
There are 86 repositories under bioinformatics-algorithms topic.
BaranziniLab/KG_RAG
Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks
dynverse/dynbenchmark
Comparison of methods for trajectory inference on single-cell data 🥇
dynverse/dynmethods
A collection of 50+ trajectory inference methods within a common interface 📥📤
rcedgar/usearch12
Open-source usearch
GregorySchwartz/too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations.
imgag/ClinCNV
Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
rcedgar/reseek
Protein structure alignment and search algorithm
muellan/metacache
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
bystrogenomics/bystro
Natural Language Search and Analysis of High Dimensional Genomic Data
mhtjsh/Bioinformatics_Algorithms
I am sharing my code repository to understand the working and principle of working of various BioInformatics code in Python
yupenghe/REPTILE
Predicting regulatory DNA elements based on epigenomic signatures
njpipeorgan/L1000-bayesian
L1000 peak deconvolution based on Bayesian analysis
google/fast-simple-lcsk
Fast and simple algorithms for computing both LCSk and LCSk+
DatomicsGroup/deepbio
This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to biomedicine. Feel free to make a pull request to contribute to this list.
mikeroyal/Bioinformatics-Guide
Bioinformatics Guide
Gartner-Lab/deMULTIplex2
deMULTIplex2: robust sample demultiplexing for scRNA-seq
TheJacksonLaboratory/JAX-CNV
Official code repository for JAX-CNV
csfoo/contrafold-se
CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data
ScialdoneLab/CIARA_python
Implementation of entropy of mixing algorithm in python
nictru/algobio
This project aims on making the algorithms covered in the corresponding lecture at LMU Munich easier to understand by providing step-by-step logging and result visualization.
jaswindersingh2/SPOT-RNA-1D
RNA Backbone Torsion and Pseudotorsion Angle Prediction using Dilated Convolutional Neural Networks
mattravenhall/bio
General bioinformatics functions in Python
PlatonB/bioinformatic-python-scripts
Простые биоинформатические скрипты на Python 3. Удобная и гибкая замена Excel/Calc для решения повседневных рутинных задач вычислительной биологии.
grgrbu/Algorithms-in-bioinformatics
Here you can find popular algorithms in Bioinformatics, which I wrote for homework in Bioinformatics Institute (bioinf.me)
Bioinformatics-Specialization/Bioinformatics-1
Finding Hidden Messages in DNA
FatemehGholamzadeh/BWT-on-Gene-Sequence
implementation of Burrows–Wheeler transform on a Gene Sequence - Bioinformatics Course - Fall 2019
AdeBC/motif-finding-algorithms
Implementation of three algorithms to solve the motif finding problem.
amsesk/SCGid
SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries
rfechtner/pypairs
PyPairs - A python scRNA-Seq classifier
SciComp8/Python_Programming
Python codes related to medical artificial intelligence, machine learning, bioinformatics algorithms, and computer science for python programming, among others
behdadmansouri/bioiinformatics-semi-global-alignment
Local, Semi-Global and Global Alignment for Protein Sequences
kangjunseo/Bioinformatics
This repository is for collect python codes and jupyter notebooks when I used to solve bioinformatics problems.
mutalibcs/Bio-informatics
Bio informatics course materials for NEUB students.
titansarus/Bioinformatics-Algorithms
Answer to "Bioinformatics Algorithms" Book Coding Problems