bystrogenomics/bystro
Natural Language Search and Analysis of High Dimensional Genomic Data
PythonApache-2.0
Issues
- 0
Sprint 15 Task List
#549 opened by cristinaetrv - 0
Integration test for PRS worker
#318 opened by cristinaetrv - 0
Unit tests for PRS worker
#319 opened by cristinaetrv - 1
Sprint 13 Task List
#526 opened by cristinaetrv - 2
Sprint 14 Task List
#536 opened by cristinaetrv - 4
Sprint 12 Task List
#501 opened by cristinaetrv - 3
Sprint 9 Task List
#421 opened by akotlar - 0
Sprint 7 - Rare variant Task List
#391 opened by cristinaetrv - 8
Sprint 11 Task List
#456 opened by akotlar - 0
Rare Variant Analysis Paper Compendium
#488 opened by akotlar - 0
- 0
Sprint 7 - Webapp Task List
#384 opened by cristinaetrv - 0
PyPI Bystro package
#446 opened by cristinaetrv - 0
[annotation] Add LOFTEE and REVEL
#444 opened by akotlar - 0
[rare variant] Add support for STAAR
#443 opened by akotlar - 0
Sprint 7 - Ancestry Task List
#390 opened by cristinaetrv - 0
[annotation] Stitch Together VCF Files - Second Step
#423 opened by akotlar - 0
- 0
[ancestry] Use assembly when choosing which model to use
#422 opened by akotlar - 0
Send assembly version with ancestry job requests
#419 opened by akotlar - 2
- 0
- 1
Filter dosage matrix during saving
#399 opened by akotlar - 1
Make saving much faster
#402 opened by akotlar - 0
Create local Ancestry cli tool
#404 opened by akotlar - 0
- 0
Add functionality for GWAS catalog as input
#370 opened by cristinaetrv - 1
Fix sporadic indexing issues
#401 opened by akotlar - 0
Write out correct statistical model for genetic correlation with Dave's agreement
#317 opened by cristinaetrv - 0
- 1
Revisit bzf use in opensearch indexer
#366 opened by akotlar - 1
[ancestry] Don't output results to beanstalkd
#388 opened by akotlar - 1
Write annotation conf file to output dir
#392 opened by akotlar - 4
Consistent bystro config naming scheme
#393 opened by wingolab - 0
Add specific ancestry connection to genetic maps
#369 opened by cristinaetrv - 0
- 1
Cristina - Sprint 6 Task List
#372 opened by cristinaetrv - 1
IBD Genomics Consortium - Task List for v2
#326 opened by akotlar - 2
Sprint 4 - Alex Task List
#348 opened by akotlar - 1
- 1
Create PRS module listener scaffold
#378 opened by akotlar - 1
Switch Ancestry Module to msgspec
#383 opened by akotlar - 1
Don't archive bystro annotation outputs by default
#376 opened by akotlar - 1
Generate Genotype Matrix from VCF during Annotation
#359 opened by akotlar - 1
For protein abundance submission, persist these protein abundance values on EFS, return a path to the results
#325 opened by cristinaetrv - 1
Document PRS models before selection of a model
#320 opened by cristinaetrv - 0
[annotation] Decide on whether to output "intergenic" refSeq.siteType, or keep it as missing
#330 opened by akotlar - 0
[chore] Update annotation config to use snake case
#328 opened by akotlar - 0
- 0