bioinformatics-databases
There are 31 repositories under bioinformatics-databases topic.
bystrogenomics/bystro
Natural Language Search and Analysis of High Dimensional Genomic Data
labstructbioinf/localpdb
Python package to manage protein structures and their annotations
Bohdan-Khomtchouk/PubData
Smart search engine for all bioinformatics databases worldwide
njpipeorgan/L1000-bayesian
L1000 peak deconvolution based on Bayesian analysis
furkanmtorun/gnomad_python_api
🧬 gnomAD Python API is used to obtain data from gnomAD (genome aggregation database).
Bohdan-Khomtchouk/FTPwalker
PyPI package for traversing extremely large FTP directory trees
sourmash-bio/wort
A database for signatures of public genomic sources
ComPath/ComPath
A web application for exploring, analyzing, and curating pathway databases
BioKIC/NEON-Biorepository-deprecated
Development base for the NEON Biorepository Data Portal at Arizona State University
mobidic/SEAL
SEAL db - Simple, Efficient And Lite database for NGS
maitreyeepaliwal/Alleropedia-Database-for-Allergens
Metadetabase of 13145 records generated for Allergens with a tabular view of the data. Web interface connected to ease the use, analysis and extraction of data with several added functionalities. Tutorial section added to educate the users of the interface design and features and the database.
b-cell-immunology/sciReptor
Single-Cell Immunoglobulin Repertoire Toolkit
carrineblank/MicrO
A Microbial Ontology of Phenotypic and Metabolic Characters, Assays, and Culture Media Found in Prokaryotic Taxonomic Descriptions
jordanlab/stringMLST_datasets
stringMLST datasets
furkanmtorun/GraphQL_API_in_Bioinformatics
Basic GraphQL API for an Example Bioinformatics Case (Flask + GraphQL with Ariadne)
gkoulouras/seq-sec-ratio
A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.
pentalpha/protein_dimension_db
Datasets with embeddings and other representations for all proteins in Uniprot/Swiss-Prot
ssi-dk/bifrost-archive
Bacterial Surveillance platform, focused on QC in Denmark
Ronlee12355/PHP_PROGRAMS
Those are my web project building by the language of PHP,CSS and JQuery
ZealousGeneticist/cartoflow
A Python workflow for taking chemicals, finding the genes they interact with, and mapping the communities of genetic interactions.
giffordlabcvr/HCV-GLUE
A GLUE project for Hepatitis C virus (HCV)
giffordlabcvr/NCBI-HBV-GLUE
Extension to HBV-GLUE - incorporates all sequences from GenBank.
Amirreza-Mousavi/R_Meets_Uniprot
A short script for searching in Uniprot using RESTful APIs
arezoupst/Bio-Python
BioPython is a Python library for analyzing biological sequences.
gabboraron/bevezetes_a_bioinformatikaba
Bevezetés a bioionformatikába
giffordlabcvr/Deltaretrovirus-GLUE
A GLUE project for Deltaretroviruses
giffordlabcvr/ISGweb
Web application for querying data on interferon-stimulated genes (ISGs)
giffordlabcvr/NCBI-HCV-GLUE
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
giffordlabcvr/NCBI-RABV-GLUE
Extension to RABV-GLUE capturing NCBI data.
ifremer-bioinformatics/BeeDeeM-Tools
Sequence management tools relying on the Bioinformatics Databank Manager System, BeeDeeM (miror).