bioinformatics-scripts
There are 165 repositories under bioinformatics-scripts topic.
HuffordLab/NAM-genomes
Detailed bioinformatics scripts and methods used in the NAM genome paper.
widdowquinn/find_differential_primers
Code for design of diagnostic PCR primers, and metabarcoding markers.
bystrogenomics/bystro
Bystro genetic analysis (annotation, filtering, statistics)
brianyiktaktsui/Skymap
High-throughput gene to knowledge mapping through massive integration of public sequencing data.
flystar233/pyscript-bio
生物信息学python代码，专注于重测序文本计算、处理
fomightez/sequencework
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
dvklopfenstein/ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
robinvanderlee/positive-selection
Scripts and procedures for detecting positively selected genes and codons in primates
vinuesa/TIB-filoinfo
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
alvesrco/pipecov
This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid-19 with a contribution of GBP 20 million (https://www.gov.uk/government/news/uk-launches-whole- genome-sequence-alliance-to-map-spread-of-coronavirus).
SouthGreenPlatform/GeMo
A mosaic genome painting tool for plant genomes
johnnytam100/pdb2uniprot
A Python script to map PDB ID + chain ID to UniProt ID.
pwwang/biopipen
A set of processes/pipelines for bioinformatics
Sydney-Informatics-Hub/Bioinformatics
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
ramsainanduri/split_multi_fasta
Split multi fasta file into single fasta files
lazappi/binf-scripts
A collection of useful bioinformatics scripts.
tomarovsky/Biocrutch
Various bioinformatics scripts
fomightez/blast-binder
Repo for running command line-based BLAST in Jupyter environment provided via Binder.
minesh1291/HowToBioinformatics
:man_scientist: Analysis Pipelines and Useful Tools
peterk87/filter_classified_reads
Filter for reads from taxa of interest using Kraken2/Centrifuge classification results.
amojarro/carrierseq
a sequence analysis workflow for low-input nanopore sequencing
danangcrysnanto/bovine-graphs-mapping
Comparison of sequencing read mapping to pangenome graphs
emmawahl/facepai
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.
fallerlab/Ribo-ODDR
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
PlatonB/bioinformatic-python-scripts
Простые биоинформатические скрипты на Python 3. Удобная и гибкая замена Excel/Calc для решения повседневных рутинных задач вычислительной биологии.
mauriceling/bactome
Toolbox for Studying Bacteria, Archaea, and Complex Taxons
orionzhou/maize
bioinformatic utility libraries in python
PollyTikhonova/ImGQfinder
The official python version of ImGQfinder: http://imgqfinder.niifhm.ru/ A tool that finds gquadruplexes and imotifs.
ulelab/peka
Find motifs enriched around prominent crosslinks
SamiLhll/rbhXpress
A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.
surh/pbi
Microbiome analysis for phosphate-defense interaction
V-Z/hybseq-scripts
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
vimalkvn/riboplot
RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).
anand84471/PythonForBioinformatics
This repository will be helpful to start using python for your Bioinformatics projects.
gibbslab/biobash
Common BASH routines for computational biology
nmtrang00/Var_Annot_Eval
An empirical variant annotation and data evaluation pipeline.