imgag/ClinCNV

How to determine the cnv type

kaqisekuzi opened this issue · 6 comments

kaqisekuzi commented

Hi @GermanDemidov @marc-sturm

How to determine from the result table whether the type of cnv is deletion or duplication?

thanks!

GermanDemidov commented

Hi, there is a column "cn_change", the number there denotes the copy-number change

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kaqisekuzi commented

Yes, I noticed a column of information.
In my results, the value of "cn_change" is between 1-8, how much is deletion ? Does a value of 1 count as deletion ? Are values greater than 1 counted as duplication?

GermanDemidov commented

It depends on ploidy of your organism

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kaqisekuzi commented

Ok ，thank you very much !!!!
My organism is human, diploid.
That's 2 as the cutoff, right?

GermanDemidov commented

Except chrX and chrY in males

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kaqisekuzi commented

OK , thank you for your prompt reply !!!