Running clinCNV reports an error

[heweihuang]

please help，thank`s .
run script : Rscript ./clinCNV.R --bed ./samples/bed_file.bed --normal ./samples/coverages_normal.cov --out result
the error is as follows：
......
Loading required package: sandwich
[1] "We start to estimate covariances between neighboring regions in germline data - may take some time 2022-03-10 17:22:41"
[1] "Tree of covariances (using 2 predictors - sum of regions' lengths and log2 of distance between regions) plotted in result 2022-03-10 17:23:28"
[1] "Calling started 2022-03-10 17:23:28"
[1] "Working with germline sample 0 2022-03-10 17:23:28"
[1] "Working with germline sample 1 2022-03-10 17:23:28"
Error in writeLines(c("#type=GENE_EXPRESSION", paste0("#track graphtype=points name="", :
cannot open the connection
Calls: source ... outputSegmentsAndDotsFromListOfCNVs -> makeTrackAnnotation -> writeLines
Execution halted

[GermanDemidov]

Hi,

I think there is something wrong with the data access permission. I think you should set chmod 755 to the results folder. ClinCNV can not write results to the file which means there is not enough permission.