Bioconductor/BSgenomeForge

Issues

• BSGenome forge

  #34 opened a year ago by JaykishanJ
  7

• Error in .subsetTwobitFile when using forgeBSgenomeDataPkg for a custom genome

  #36 opened a year ago by vmurigneu
  1

• [macOS] Two tests fail: forgeBSgenomeDataPkgFromNCBI and forgeBSgenomeDataPkgFromUCSC

  #35 opened a year ago by barracuda156
  23

• Try to improve BSgenomeForge:::abbreviate_organism_name()

  #18 opened 2 years ago by hpages
  3

• Implement, export, and document forgeBSgenomeDataPkgFromUCSC()

  #23 opened 2 years ago by hpages
  1

• Prepare the package for submission, and submit

  #29 opened 2 years ago by hpages
  10

• Write package vignette

  #24 opened 2 years ago by hpages
  14

• forgeBSgenomeDataPkgFromNCBI() enhancement: do not download genomic sequences again if already downloaded

  #25 opened 2 years ago by hpages
  5

• Add unit tests for BSgenomeForge:::.get_circ_seqs()

  #17 opened 2 years ago by hpages
  8

• forgeBSgenomeDataPkgFromNCBI() enhancement: Refine handling of 'circ_seqs' argument

  #16 opened 2 years ago by hpages
  9

• forgeBSgenomeDataPkgFromNCBI() should raise an error if 'circ_seqs' is a mix of assembled molecules with non-assembled molecules

  #19 opened 2 years ago by kakopo
  4

• forgeBSgenomeDataPkgFromNCBI() enhancement: Programmatically obtain the assembly name from NCBI

  #14 opened 2 years ago by hpages
  3

• Add 'circ_seqs' argument to forgeBSgenomeDataPkgFromNCBI()

  #13 opened 2 years ago by hpages
  8

• Implement, export, and document forgeBSgenomeDataPkgFromNCBI()

  #11 opened 2 years ago by hpages
  8

• Add "NCBI_BSgenome_datapkg" package template to BSgenomeForge and try createPackage() on it

  #9 opened 2 years ago by hpages
  3

• Add 'assembly_accession' argument to fastaTo2bit()

  #7 opened 2 years ago by hpages
  3

• Implement, export, and document, a utility function for converting a file from FASTA to 2bit

  #5 opened 2 years ago by hpages
  9

• Implement, export, and document downloadGenomicSequencesFromNCBI()

  #1 opened 2 years ago by hpages
  3

• Implement, export, and document downloadGenomicSequencesFromUCSC()

  #2 opened 2 years ago by hpages
  29