waldronlab/curatedTCGAData
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
R
Issues
- 0
- 2
Mutation data on BLCA study [Question]
#58 opened by bblodfon - 2
Date of data generation
#57 opened by adomingues - 0
cached snapshot data is immutable?
#56 opened by jeffstang - 1
Error with version 2.1.0
#55 opened by pipaber - 5
- 1
RNASeq2Gene values
#54 opened by nargessn - 2
Viewing Clinical Data Floods Console With Text
#13 opened by DarioS - 5
default version number?
#46 opened by lwaldron - 1
Question about CNA data
#52 opened by bblodfon - 2
Normalization applied in RNASeq2GeneNorm
#50 opened by mlmms - 1
Represntation of GDC data portal
#48 opened by SerifatAdebola - 2
Methylation data platform
#49 opened by fedenichetti - 1
Mutations Almost All Missing
#47 opened by DarioS - 2
Error: failed to load resource name: EH762 title: LGG_Mutation-20160128 reason: 1 resources failed to download
#45 opened by lwaldron - 0
Update CITATION
#43 opened by lwaldron - 2
- 5
high-level binding of colData?
#42 opened by vjcitn - 1
merge data where needed (GBM, OV)
#27 opened by LiNk-NY - 1
- 9
Download counts (TPM) data?
#38 opened by mherberg - 4
- 7
seqinfo for GRanges elements?
#16 opened by vjcitn - 4
issues with `subsetByAssay`
#17 opened by LiNk-NY - 2
- 6
- 1
bulletproof for missing packages?
#39 opened by vjcitn - 2
exportClass() no longer supported?
#37 opened by michaelSkaro - 5
I run into the following problems when using the curatedTCGAData package
#32 opened by maggiejiangzhao - 1
No internet localHub fallback
#36 opened by LiNk-NY - 5
Simplified methylation data
#34 opened by pcheng84 - 0
More specific progress updates
#35 opened by lgeistlinger - 2
status of repeated samples from donors in BRCA
#33 opened by vjcitn - 1
Overlap TCGA samples
#30 opened by vittoriofortino84 - 4
Methylation data of type 'character'?
#20 opened by pdmoerland - 1
import/export TCGAutils
#21 opened by LiNk-NY - 3
Provide Access to Latest TCGA Data
#10 opened by DarioS - 1
- 6
Missing GISTIC data for SKCM
#29 opened by pcheng84 - 5
Error with accessing DNA methylation data
#24 opened by j-lawson - 3
severe missingness in ovarian pData?
#26 opened by LiNk-NY - 0
- 1
systematic colData trimming
#23 opened by lwaldron - 2
two BRCA methylation datasets?
#22 opened by lwaldron - 2
add helper function to show subtype names
#8 opened by LiNk-NY - 1
Vignette Loading Library MultiAssayExperiment
#11 opened by DarioS - 1
Temporary Data Stored Inside User's Home Directory
#12 opened by DarioS - 0
"RPPAArrayNULL" in Available Data Types
#15 opened by LiNk-NY - 14
Error reading from connection
#14 opened by oricel - 3
unmerged datasets
#9 opened by lwaldron