adomingues
Former bench (neuro)biologist converted to RNA biology and data analysis. I speak _pipette_ and _keyboard_.
Germany
Pinned Repositories
AcademicMarkdown
Extensions to MarkdownEditing for writing academic papers
adomingues.github.io
The journey of a bench biologist to the dark arts of bioinformatics
anomaly-detection-resources
Anomaly detection related books, papers, videos, and toolboxes
cleaneRnames
Single function R package to clean the output of base::make.names
create_r_apckages
collection of links on how to create R packages
createProjectDirectories
Simple script to quickly set-up a VC project.
filterReads
Filter alignments on sequence length and/or identity of first nucleotide.
NGSpipe2go
a set of NGS pipelines
foodforthepeople
A repository of tasty, simple, and mostly inexpensive recipes. Cooking for all!
adomingues's Repositories
adomingues/create_r_apckages
collection of links on how to create R packages
adomingues/createProjectDirectories
Simple script to quickly set-up a VC project.
adomingues/filterReads
Filter alignments on sequence length and/or identity of first nucleotide.
adomingues/makeitprettier
A set of ggplot themes and functions to make plots prrrettier
adomingues/adomingues.github.io
The journey of a bench biologist to the dark arts of bioinformatics
adomingues/anomaly-detection-resources
Anomaly detection related books, papers, videos, and toolboxes
adomingues/cleaneRnames
Single function R package to clean the output of base::make.names
adomingues/ATAC-seq
adomingues/bioc-refcard
Bioconductor cheat sheet
adomingues/clipseq
UNDER CONSTRUCTION: CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
adomingues/derSupplement
adomingues/enrichR
An R interface to enrichR
adomingues/forgotten_git
All the git commands I keep googling.
adomingues/ggpubr
'ggplot2' Based Publication Ready Plots
adomingues/ggthemes
ggplot themes and scales
adomingues/ghibli
Studio Ghibli colour palettes for R
adomingues/JirAgileR
User-friendly :small_blue_diamond:JIRA API wrapper. Track projects & issues from within R
adomingues/komaletter
Simple yet flexible Letters via the KOMA-Script LaTeX Bundle from R Markdown
adomingues/littlehelperRs
A package will all those little functions I use make my every day life easier.
adomingues/md-cv
markdown cv / résumé built with jekyll
adomingues/pandoc-letter
Pandoc template for writing letters in markdown
adomingues/readprofiler
[R] Package to characterize aligned reads from BAM files.
adomingues/redl_domingues_et_al_dev_2020
Deposit of backlisted regions
adomingues/RIPSeeker
adomingues/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
adomingues/rweekly.org
R Weekly
adomingues/scID
scID
adomingues/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
adomingues/tools
Python package with helper tools for the nf-core community.
adomingues/workflows-nextflow
Workflow management with Nextflow and nf-core