Issues
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- 0
- 0
aggregated multi-sample FastQC plots
#67 opened by ssayols - 0
Dead links
#68 opened by adomingues - 0
module exit strings
#61 opened by ssayols - 0
new module to collect tool versions
#62 opened by ssayols - 1
use \${TMP} to sort bam file
#63 opened by ssayols - 0
add test dataset for rna-seq paired end
#58 opened by ssayols - 0
add test dataset for chip-seq paired end
#57 opened by ssayols - 1
add test dataset for scRNA-seq
#60 opened by ssayols - 0
New DNA methylation pipeline
#49 opened by ssayols - 0
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- 1
adapt scRNA-seq pipeline to the new architecure
#54 opened by ssayols - 1
- 1
add smallRNA-seq test dataset
#59 opened by ssayols - 0
identification string for all pipelines
#64 opened by ssayols - 1
- 1
adapt chip-seq pipeline to the new architecture
#50 opened by ssayols - 1
adapt rna-seq pipeline to the new architecture
#51 opened by ssayols - 1
adapt dna-seq pipeline to the new architecure
#52 opened by ssayols - 3
MultiQC NGS module
#48 opened by ssayols - 0
Add legend to gene body coverage plots
#45 opened by adomingues - 0
Stages to filter alignments
#46 opened by adomingues - 0
ChIP-seq pipeline - longnames
#47 opened by adomingues - 1
DESeq2: output Dispersion plot
#44 opened by adomingues - 0
Sample correlation
#43 opened by adomingues - 0
Cutadapt plots are not representing true values
#40 opened by adomingues - 1
use function parameters and return values
#36 opened by oliverdrechsel - 0
MultiQC like plots
#35 opened by oliverdrechsel - 0
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add motif discovery (rGadem)
#20 opened by oliverdrechsel - 0
- 1
improve the ChIPseq report
#30 opened by karaulanov - 3
Style guide
#38 opened by adomingues - 1
make multimappers venn smaller in the report
#32 opened by ssayols - 0
split markduplicates module into mark+remove
#31 opened by ssayols - 2
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add peak annotation (ChIPseeker)
#19 opened by oliverdrechsel - 1
env.sh requirement
#34 opened by AMChalkie - 1
Slurm transition
#37 opened by adomingues - 2
bowtie1pe and fastq.gz
#41 opened by adomingues - 0
Unavailable R version
#42 opened by adomingues - 1
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improve the text of the report
#23 opened by oliverdrechsel - 1
- 0
Samtools with env.sh
#28 opened by nkreim - 0
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Add TOOL_JAVA var to control for the java version
#27 opened by ssayols - 1