waldronlab/SingleCellMultiModal

Issues

• CITEseq MAE to SCE conversion improvements

  #68 opened a year ago by drighelli
  3

• Vignettes not building

  #70 opened 2 years ago by lwaldron
  7

• Provide context in vignettes

  #71 opened 2 years ago by lwaldron
  1

• document colData

  #6 opened 2 years ago by lwaldron
  0

• fix order of metadata.csv columns

  #9 opened 2 years ago by LiNk-NY
  2

• celltype metadata in scMultiome 10x PBMC tutorial

  #50 opened 2 years ago by akhst7
  2

• celltype annotations

  #51 opened 2 years ago by drighelli
  3

• create a ontomap

  #52 opened 2 years ago by drighelli
  3

• quality control of cells

  #53 opened 2 years ago by drighelli
  6

• supplementary data

  #54 opened 2 years ago by drighelli
  2

• Add documentation for QC in each dataset

  #65 opened 2 years ago by drighelli
  1

• CITEseq cell annotation labels

  #66 opened 2 years ago by drighelli
  3

• Ontology IDs

  #63 opened 2 years ago by kbeckenrode
  3

• ECCITEseq data missing rownames

  #60 opened 2 years ago by drighelli
  4

• Add Ludwig as author

  #56 opened 2 years ago by LiNk-NY
  0

• pandoc-citeproc: reference Specht2020-jm not found

  #48 opened 3 years ago by LiNk-NY
  1

• citeseq vignette mse object

  #43 opened 3 years ago by drighelli
  0

• SCoPE2 vignette index

  #44 opened 3 years ago by drighelli
  0

• problem on spatialCoords in seqFISH vignette

  #40 opened 4 years ago by drighelli
  0

• SpatialExperiment creation error in seqFISH

  #39 opened 4 years ago by drighelli
  0

• Vignettes failing during Bioconductor repo build

  #35 opened 4 years ago by drighelli
  1

• SingleCellMultiModal could store the experiments technologies

  #37 opened 4 years ago by drighelli
  5

• clean up ECCITEseq vignette output

  #32 opened 4 years ago by lwaldron
  3

• PBMC vignette should be named as TENxMultiome

  #34 opened 4 years ago by drighelli
  1

• SingleCellMultiModal function fails with G&T dataset

  #36 opened 4 years ago by drighelli
  1

• CITEseq breaks with one mode

  #19 opened 4 years ago by LiNk-NY
  1

• Contribution: incorrect link to Google Sheet

  #25 opened 4 years ago by cvanderaa
  3

• scNMT: invalid name for slot of class "ExperimentHub": dataType

  #22 opened 4 years ago by aljabadi
  4

• scNMT MultiAssayExperiment does not include CTCF or p300 assays

  #15 opened 4 years ago by LiNk-NY
  1

• Make `version` argument missing for user confirmation and input.

  #16 opened 4 years ago by LiNk-NY
  0

• DOI not working

  #12 opened 4 years ago by drisso
  2

• Vignette links are 'not found'

  #13 opened 4 years ago by kbeckenrode
  3

• Google Drive Sheet link not working

  #8 opened 5 years ago by drighelli
  1

• notes on data processing

  #7 opened 5 years ago by lwaldron
  0

• document assays

  #5 opened 5 years ago by lwaldron
  1

• document rownames

  #4 opened 5 years ago by lwaldron
  4