stefanusbernard
PhD student of Bioinformatics at SFI CRT in Genomics Data Science
University of GalwayGalway, Ireland
Pinned Repositories
Biopython-Genomics-Analysis
Repository codes for genomics analysis using biopython module. Originally created by S. Bernard & M. Aldino for the final project of Genomics course.
Biopython-Simple-GUI-App
Simple GUI based app utilize the combination modules of Biopython and PyQT and PySide2.
code-fastfoundations
crisprseq
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
Data-Mining-TCGA-ICOIACT-2019
Repository code for Identification of microRNA Targeting Cancer Gene of Colorectal Carcinoma in Caucasian Population. International Conference on Information and Communication Technology 2019 (Bernard, S & Agustriawan, D., 2019)
dataquest-solutions
Solutions for projects.
Nanopore-SARS-CoV-2-Amplicon-Drop-Analysis
This repository contains the codes for ARTIC/Midnight Oxford Nanopore NGS Amplicon Drop analysis. Here I am using ARTIC V3 as an example.
nf-training-public-sb
Nextflow training material
paralog_SL_prediction
Code for prediction of synthetic lethality between paralog pairs
SARS-CoV-2-CoVSurver-Heatmap
Repository to calculate frequency of mutations and plot to heatmap from SARS-CoV-2 GISAID data
stefanusbernard's Repositories
stefanusbernard/Biopython-Genomics-Analysis
Repository codes for genomics analysis using biopython module. Originally created by S. Bernard & M. Aldino for the final project of Genomics course.
stefanusbernard/Biopython-Simple-GUI-App
Simple GUI based app utilize the combination modules of Biopython and PyQT and PySide2.
stefanusbernard/code-fastfoundations
stefanusbernard/crisprseq
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
stefanusbernard/Data-Mining-TCGA-ICOIACT-2019
Repository code for Identification of microRNA Targeting Cancer Gene of Colorectal Carcinoma in Caucasian Population. International Conference on Information and Communication Technology 2019 (Bernard, S & Agustriawan, D., 2019)
stefanusbernard/dataquest-solutions
Solutions for projects.
stefanusbernard/Nanopore-SARS-CoV-2-Amplicon-Drop-Analysis
This repository contains the codes for ARTIC/Midnight Oxford Nanopore NGS Amplicon Drop analysis. Here I am using ARTIC V3 as an example.
stefanusbernard/nf-training-public-sb
Nextflow training material
stefanusbernard/paralog_SL_prediction
Code for prediction of synthetic lethality between paralog pairs
stefanusbernard/SARS-CoV-2-CoVSurver-Heatmap
Repository to calculate frequency of mutations and plot to heatmap from SARS-CoV-2 GISAID data
stefanusbernard/stefanusbernard
A personal repository for Gatchmon 'Stefanus Bernard'