Pinned Repositories
AmpliconSuite-pipeline
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
CCGA_ecDNA_eccDNA
scripts for "Extrachromosomal Circular DNA Orchestrates Genome Heterogeneity and Outcome in Urothelial Bladder Carcinoma"
Circle-Map-Cpp_Pipeline
This is a snakemake pipeline using for detecting eccDNA from circle-seq data based on Circle-Map-Cpp
crisproff_jl
off-targeting assesment of Cas9 gRNAs using Julia
eccDNA_analysis
This is a repository for eccDNA analysis that stored historical scripts
EMBOSSR
This is a script that call EMBOSS needle alignment tool in R
FindEnzymes
lcs
An R package is used to get the longest common substring.
Massively_RGN_OTs
Scripts for indel calling of SpCas9 for SURRO-seq
myBlog
my own blog build by pynecone
panxiaoguang's Repositories
panxiaoguang/CCGA_ecDNA_eccDNA
scripts for "Extrachromosomal Circular DNA Orchestrates Genome Heterogeneity and Outcome in Urothelial Bladder Carcinoma"
panxiaoguang/crisproff_jl
off-targeting assesment of Cas9 gRNAs using Julia
panxiaoguang/AmpliconSuite-pipeline
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
panxiaoguang/EMBOSSR
This is a script that call EMBOSS needle alignment tool in R
panxiaoguang/FindEnzymes
panxiaoguang/lcs
An R package is used to get the longest common substring.
panxiaoguang/Massively_RGN_OTs
Scripts for indel calling of SpCas9 for SURRO-seq
panxiaoguang/myBlog
my own blog build by pynecone
panxiaoguang/myblog2
panxiaoguang/MyBlog_Discuss
panxiaoguang/Naive-Tailwindcss_template
Created with StackBlitz ⚡️
panxiaoguang/nuxt-blog-guang
Personal blog site built with Nuxt3, Nuxt-Content V2 & Tailwind. Deployed in vercel
panxiaoguang/panxiaoguang
panxiaoguang/panxiaoguang.github.io
panxiaoguang/python3.11_speedtest
Simple speed tests for Python 3.11
panxiaoguang/Reflex-IGV
How to wrap IGV.js in Reflex python App?
panxiaoguang/SequenceTool
A tiny web app built by reflex for self using
panxiaoguang/Singularity_CircleMapPlus
Using github action to build a singularity image for Circle-Map-cpp automaticlly
panxiaoguang/Singularity_GISTIC
Build Gistic2 apptainer image using Github Action
panxiaoguang/StatisticForScience
Lecture ppt and exercises
panxiaoguang/SurroNPROT
Some scripts including library design and read analysis for SURROseq