Russel88/CRISPRCasTyper

Issues

• "cctyper -h" error information, about pkg_resources, XGBoost

  #59 opened 5 days ago by ShuqingL
  1

• Fresh install does not work: DistributionNotFound (xgboost)

  #55 opened 4 months ago by samnooij
  2

• Output complete or partial of Cas system

  #57 opened 3 months ago by neptuneyt
  1

• Generation of core.xx file

  #58 opened 3 months ago by neptuneyt
  1

• Impossible to obtain results with CrisprCasTyper

  #56 opened 4 months ago by Nabila44300
  6

• Source for repeats.fa

  #54 opened 4 months ago by qbilius
  1

• error while loading shared libraries: libnsl.so.1

  #53 opened 6 months ago by mlarjim
  0

• access to sequences that used to geenrate Cas profiles

  #52 opened 8 months ago by Huanle
  1

• access to sequences that used to geenrate Cas profiles

  #51 opened 8 months ago by Huanle
  0

• ValueError: invalid literal for int() with base 10: 'lengt'

  #50 opened 8 months ago by AndAvia
  2

• (Question) How can I plot svg post-hoc after a run?

  #49 opened 10 months ago by jolespin
  1

• (Question) provide GFF file for pre computed gene calls?

  #45 opened a year ago by jolespin
  5

• If minced detects a CRISPR with N's in the repeat sequence

  #48 opened a year ago by Russel88
  0

• XGBoost model incompatible

  #46 opened a year ago by Matt-BF
  8

• CCTyper results

  #43 opened a year ago by elozanoe
  4

• Orphan CRISPR definition

  #44 opened a year ago by bio-unach
  2

• cctyper dies with missing files

  #14 opened 4 years ago by jnesme
  4

• Include I-B CAST loci

  #13 opened a year ago by Russel88
  0

• Execution against protein fasta and gff

  #33 opened 2 years ago by xvtyzn
  2

• castyping.py having an issue with positional arguments.

  #40 opened 2 years ago by jamesrgurney
  2

• Creating empty files when there's no data

  #39 opened 2 years ago by nataquinones
  1

• Option to use Prodigal-gv

  #37 opened 2 years ago by snayfach
  0

• Meaning of asterisk at the end of protein sequence

  #38 opened 2 years ago by Smiriti-Gupta
  1

• Different results from CRISPR Cas typer web server and standalone version

  #34 opened 2 years ago by Smiriti-Gupta
  5

• 

  #36 opened 2 years ago by Smiriti-Gupta
  0

• Error when running cctyper: sed: cannot rename <output filename>/sed78a7GM: Permission denied

  #35 opened 2 years ago by jdcfc
  2

• FileNotFoundError: blast.tab

  #30 opened 2 years ago by TianyiChang
  3

• A complement to CRISRPRCasFinder or its own thing?

  #32 opened 2 years ago by JavierFFavieres
  1

• Complete genome and draft genome

  #31 opened 2 years ago by illusion-a
  2

• No database with conda install?

  #29 opened 2 years ago by nicholascdove
  2

• Error in BLASTing for CRISPR near cas operons

  #27 opened 2 years ago by linzhl1
  4

• CrisprCasTyper webserver

  #28 opened 3 years ago by ShinyBasu
  1

• Expose minced options

  #26 opened 3 years ago by jimmyliu1326
  1

• Extract spacer coordinates

  #15 opened 3 years ago by genomesandMGEs
  3

• add repeated sequence to repeats.fa

  #25 opened 3 years ago by fabgenomics
  1

• Problems running the program

  #24 opened 3 years ago by JavierFFavieres
  3

• faa file of individual Cas proteins?

  #21 opened 3 years ago by mhyleung
  7

• Docker for cctyper

  #23 opened 3 years ago by mhyleung
  1

• Multiple cctyper runs on the same contig giving different outputs?

  #22 opened 3 years ago by mhyleung
  2

• Cas6 in red in visualization?

  #20 opened 3 years ago by mhyleung
  1

• Question about spacer direction

  #19 opened 3 years ago by Dfvandenberg
  2

• About spacer sequences

  #18 opened 3 years ago by wfgui
  1

• alternative to minced?

  #17 opened 3 years ago by ltcall
  1

• Warning messages while running

  #16 opened 3 years ago by LeeNicha
  3

• Add support for numeric fasta headers

  #12 opened 4 years ago by Russel88
  1

• Speed up CRISPR stats calculation

  #11 opened 4 years ago by Russel88
  1

• Assembly accession in web server

  #10 opened 4 years ago by Russel88
  1

• New V-A variants

  #8 opened 4 years ago by Russel88
  1

• Fusion proteins

  #9 opened 4 years ago by Russel88
  0

• Make it possible to enhance plot with custom HMM database

  #7 opened 5 years ago by Russel88
  1