Pinned Repositories
CANS
Consensus calling for Amplicon Nanopore Sequencing
InfluenzaNanopore
Influenza A Full-Length Consensus Calling for Nanopore Sequencing Data
isPCR
Rapid local alignment search by in silico PCR
MBB_mGWAS
msa-vis
Publication-grade visualizations for multiple sequence alignments
SamnSero_Nextflow
Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance
seqdb
Local Sequence Database Management Functions
SsuisSero
Rapid Streptococcus suis Serotyping on Nanopore Sequencing Data
SsuisSerotyping_pipeline
A pipeline for determining serotype, MLST, and virulence factors of Streptococcus suis.
tCANS
Consensus calling for tiling amplicon nanopore sequencing
jimmyliu1326's Repositories
jimmyliu1326/CANS
Consensus calling for Amplicon Nanopore Sequencing
jimmyliu1326/isPCR
Rapid local alignment search by in silico PCR
jimmyliu1326/SamnSero_Nextflow
Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance
jimmyliu1326/InfluenzaNanopore
Influenza A Full-Length Consensus Calling for Nanopore Sequencing Data
jimmyliu1326/MBB_mGWAS
jimmyliu1326/seqdb
Local Sequence Database Management Functions
jimmyliu1326/SsuisSero
Rapid Streptococcus suis Serotyping on Nanopore Sequencing Data
jimmyliu1326/SsuisSerotyping_pipeline
A pipeline for determining serotype, MLST, and virulence factors of Streptococcus suis.
jimmyliu1326/thermonucleotideBLAST
Searching DNA/RNA sequence databases with PCR and/or probe queries
jimmyliu1326/CBW23_IDGE_Module5
jimmyliu1326/HpsuisSero
Rapid Haemophilus parasuis serotyping pipeline for Nanpore data
jimmyliu1326/IDE_2021
jimmyliu1326/msa-vis
Publication-grade visualizations for multiple sequence alignments
jimmyliu1326/SamnSorter
Fast assortment of Salmonella genomes into stable clusters using phylogenetic placement and kNN classifier
jimmyliu1326/tCANS
Consensus calling for tiling amplicon nanopore sequencing
jimmyliu1326/Cedar_docs
jimmyliu1326/Bat_Guano_BC
jimmyliu1326/bioseqenv
jimmyliu1326/cgmlst-dists
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
jimmyliu1326/cidgoh_docker_2023
jimmyliu1326/cidgoh_qc
Workflow for quality check for NGS data
jimmyliu1326/docker_ci_demo
jimmyliu1326/DzAPI_Convert
Automated conversion of Dz API natives in war3map.j
jimmyliu1326/group_08_ADULT-INCOME-1
STAT547 Group project for Group-8, working with adult income data
jimmyliu1326/IDE2021_integrated_hw
jimmyliu1326/jimmyliu1326
Config files for my GitHub profile.
jimmyliu1326/PHL_snakemake_demo
Snakemake tutorial materials for Sequencing Workshop
jimmyliu1326/SamnTrek
Local NCBI Pathogen Detection search tool to investigate/explore local Salmonella epidemiology in a global context
jimmyliu1326/taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies
jimmyliu1326/vtec23_integrated
Integrated Lab for VTEC 2023