Expose minced options
Closed this issue · 1 comments
jimmyliu1326 commented
Hello,
Is it possible to make the minced options available when calling cctyper ? Options like -minNR, -minRL, etc. are very useful when it comes to optimizing CRISPR array annotations. I have noticed that certain repeats are missed because the array did not carry the minimum number of repeats required.
Cheers,
Jimmy
Russel88 commented
Hi Jimmy,
Good idea. I have now included that option in the new version 1.6.3. It is not on conda yet, but if you have cctyper 1.6.2 installed via conda, you can run the following in your conda env to upgrade to 1.6.3:
python -m pip install cctyper --upgrade
Cheers,
Jakob