Question about spacer direction
Closed this issue · 2 comments
Dfvandenberg commented
Dear Russel,
are the spacers correction for their orientation like CRISPRDetect/CRISPRDirection does?
With kind regards,
Daan
Russel88 commented
Dear Daan,
This is currently not implemented, but we are working on adding this as an extension.
However, I will also point you to this paper (https://doi.org/10.3389/fmicb.2019.02054), which suggests that the orientation most of the time matches with the orientation of the associated cas genes. In the cctyper output you can find the direction of the interference and adaptation modules. However, this criteria can obviously not be used for orphan arrays.
Best,
Jakob
Dfvandenberg commented
Dear Jakob,
thank you for your response!
I will read it.
with kind regards,
Daan